[1] "2025-04-30 00:54:07 MDT" [1] "1510" "151221" "d355" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151221a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:54:11 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:54:11 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:54:11 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:54:29 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:54:31 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:54:34 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 396.12 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.85 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 229 238 0.1600142 0.1662778 0.1638420 2 2.802680 378.0627 3 2 239 248 0.1669732 0.1732361 0.1708016 2 -19.906648 491.0494 5 2 529 538 0.3686790 0.3749382 0.3725040 3 -19.850203 495.8742 6 4 539 548 0.3756334 0.3818933 0.3794590 3 2.846242 379.1263 7 3 549 558 0.3825886 0.3888518 0.3878084 3 -10.714078 481.6955 9 4 829 838 0.5773630 0.5836238 0.5811896 2 2.874227 380.1188 10 2 839 848 0.5843192 0.5905787 0.5881443 2 -19.833625 494.1185 13 2 1129 1138 0.7860683 0.7923564 0.7899058 3 -19.852102 494.0097 14 4 1139 1148 0.7930535 0.7993280 0.7968915 3 2.854930 380.8958 15 5 1149 1158 0.8000234 0.8062833 0.8052401 NA -10.098438 454.5175 16 3 1159 1168 0.8069787 0.8132384 0.8121949 3 -10.703344 480.4221 18 4 1429 1436 0.9947986 0.9996667 0.9979280 1 2.808594 380.8503 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.121087 1.268267 -2.548390e-03 0.09321663 0.007395812 2.616628 3 1.121235 1.268423 -2.404056e-03 0.72358061 0.006378582 3.979246 5 1.122727 1.270036 2.678257e-05 1.31803172 0.002250930 3.949030 6 1.122753 1.270066 -2.576616e-04 0.29475577 0.003306757 1.774822 7 1.122904 1.270247 1.805277e-03 -1.38788185 0.004785552 2.039639 9 1.123754 1.271193 1.335148e-03 0.24554755 0.003848547 3.208901 10 1.123832 1.271289 -6.671000e-04 0.27715264 0.002627125 2.213616 13 1.124115 1.271582 -8.729669e-04 -0.56071413 0.003102587 3.181643 14 1.124072 1.271530 1.277888e-03 1.32955516 0.004449047 4.134532 15 1.124091 1.271552 -1.884830e-02 -1.07091626 0.013346640 1.804154 16 1.124063 1.271530 -7.458184e-04 2.40121110 0.004335150 3.227681 18 1.122040 1.269491 -2.157963e-04 2.12179664 0.002076562 4.126254 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.492 co2l1 = 0.947 co2l0 = -0.006" [1] "co2l0 = -201.36 co2l1 = 0.224" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "30 out of 140 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "110 out of 1284 1-min values rejected as stack air" [1] "110 out of 990 Line 1 1-min values rejected as stack air" [1] "0 out of 294 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"