[1] "2025-04-30 00:53:34 MDT" [1] "1510" "151220" "d354" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151220a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:53:38 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:53:38 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:53:38 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:53:57 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:53:58 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:54:02 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 403.65 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 166 175 0.1164700 0.1227293 0.1202952 3 -19.899141 494.8255 3 4 176 185 0.1234249 0.1296844 0.1272503 3 2.816227 379.9162 4 3 186 195 0.1303797 0.1366428 0.1355998 3 -10.754734 484.3012 6 4 466 475 0.3251690 0.3314282 0.3289941 2 2.786406 356.9971 7 2 476 485 0.3321238 0.3383831 0.3359491 2 -19.915531 496.8333 9 2 766 775 0.5338780 0.5401411 0.5377051 3 -19.930547 494.2009 10 4 776 785 0.5408365 0.5470961 0.5446617 3 2.768164 375.7381 11 5 786 795 0.5477917 0.5540509 0.5530076 NA -10.147750 453.5642 12 3 796 805 0.5547465 0.5610056 0.5599624 3 -10.794469 478.9645 14 4 1066 1075 0.7426019 0.7488613 0.7464274 2 2.779922 377.0847 15 2 1076 1085 0.7495571 0.7558198 0.7533858 2 -19.932320 491.6368 19 2 1365 1374 0.9513118 0.9575714 0.9551372 3 -19.942672 495.0142 20 4 1375 1384 0.9582670 0.9645301 0.9620959 3 2.757320 374.0564 21 3 1385 1394 0.9652257 0.9714850 0.9704418 3 -10.800859 482.2745 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.119128 1.266253 9.094232e-04 0.19414221 0.002507077 1.591830 3 1.119068 1.266191 -3.034242e-05 0.24061424 0.006740067 3.141193 4 1.119142 1.266259 -1.361644e-03 -2.11928080 0.005084745 2.806533 6 1.118659 1.265846 6.790730e-04 1.84751214 0.003253775 23.675039 7 1.118724 1.265931 -1.790519e-05 1.64630644 0.002528631 10.538690 9 1.118237 1.265265 2.882566e-04 -0.58446059 0.002830350 2.883433 10 1.118212 1.265232 6.201950e-04 2.83791243 0.006843103 7.112675 11 1.118214 1.265229 1.996672e-03 -2.13238824 0.001414214 2.845542 12 1.118214 1.265246 -1.867792e-03 -0.36984901 0.005114755 1.303937 14 1.118883 1.265849 6.405043e-04 -1.04786964 0.003583000 3.473690 15 1.118987 1.265964 -4.599077e-04 0.11851521 0.003106452 5.008628 19 1.120068 1.267175 -3.996889e-04 -1.25048239 0.001113909 5.394719 20 1.120054 1.267167 -6.546911e-04 -0.29441295 0.006524288 3.997334 21 1.120186 1.267282 4.740671e-04 -0.09031737 0.002113612 1.836390 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.543 co2l1 = 0.947 co2l0 = -0.005" [1] "co2l0 = -194.79 co2l1 = 0.21" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "72 out of 250 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "178 out of 1248 1-min values rejected as stack air" [1] "163 out of 1190 Line 1 1-min values rejected as stack air" [1] "15 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"