[1] "2025-04-30 00:53:08 MDT" [1] "1510" "151219" "d353" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151219a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85883 63 [1] 85883 [1] 85883 [1] "testing skipping spike filter" [1] 85883 [1] 85883 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:53:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.789" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.789" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:53:13 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:53:13 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:53:25 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:53:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1413 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:53:29 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 399.57 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 112 121 0.08471895 0.09097839 0.08854424 2 2.910500 380.7581 4 3 122 131 0.09167370 0.09793403 0.09689037 2 -10.647352 484.6248 6 3 381 390 0.28160194 0.28786143 0.28681827 3 -10.732820 478.2234 7 2 391 400 0.28855674 0.29481603 0.29238184 3 -19.861406 495.7272 8 4 401 410 0.29551152 0.30177850 0.29933873 3 2.834969 379.5455 9 5 411 420 0.30247390 0.30873678 0.30769269 NA -10.950375 456.4667 11 4 681 690 0.49035541 0.49661808 0.49418376 2 2.798844 381.2768 12 2 691 700 0.49731366 0.50357295 0.50113903 2 -19.907406 492.4764 14 2 981 990 0.69907922 0.70533912 0.70290470 3 -19.937117 494.2844 15 4 991 1000 0.70603464 0.71229450 0.70986027 3 2.766898 375.0505 16 3 1001 1010 0.71298996 0.71924948 0.71820638 3 -10.798445 481.7074 18 4 1281 1290 0.90776623 0.91402639 0.91159195 2 2.780977 378.7325 19 2 1291 1300 0.91472164 0.92098478 0.91854772 2 -19.931117 491.8344 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.126341 1.274393 0.0004249979 -0.41609939 0.004001813 5.281991 4 1.126338 1.274248 -0.0005860806 -1.68867971 0.002531264 3.098540 6 1.122464 1.269939 0.0001359478 -1.39723288 0.002417024 2.060067 7 1.122407 1.269840 -0.0013017636 -1.27356841 0.003928064 6.202145 8 1.122248 1.269689 -0.0023059989 -0.53651807 0.007610056 3.482323 9 1.122109 1.269583 0.0074897017 3.29159001 0.005303301 4.309835 11 1.119355 1.266719 0.0013536823 1.17075234 0.004259181 3.231252 12 1.119350 1.266705 0.0008172155 0.71995438 0.003327208 2.711841 14 1.117597 1.264794 0.0005445401 1.04173152 0.001534004 2.935700 15 1.117519 1.264714 0.0015995666 2.46594771 0.006040316 8.272144 16 1.117512 1.264706 0.0006158611 2.37034872 0.002172894 3.075076 18 1.118217 1.265357 0.0004182329 0.58813199 0.003096466 3.083295 19 1.118199 1.265354 -0.0016558771 0.05726573 0.004396559 3.354969 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.509 co2l1 = 0.948 co2l0 = -0.004" [1] "co2l0 = -200.45 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "112 out of 265 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "153 out of 1222 1-min values rejected as stack air" [1] "153 out of 1222 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"