[1] "2025-04-30 00:52:04 MDT" [1] "1510" "151217" "d351" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151217a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:52:08 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:52:09 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:52:09 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:52:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:52:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1425 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:52:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 399.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.48 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 3 4 13 0.003732118 0.009995341 0.008951975 1 -10.226484 477.6933 4 4 283 292 0.198515046 0.204774769 0.202340271 2 3.314883 377.0204 5 2 293 302 0.205470341 0.211729514 0.209295446 2 -19.367672 500.0877 7 2 583 592 0.407444560 0.413706453 0.411270294 3 -19.377219 493.9934 8 4 593 602 0.414407176 0.420676563 0.418241923 3 3.310281 379.1986 9 5 603 612 0.421371759 0.427640394 0.426597381 NA -9.597562 448.8366 10 3 613 622 0.428335706 0.434595544 0.433552054 3 -10.238305 482.1318 12 4 882 891 0.616154659 0.622414988 0.619980794 2 3.278781 379.5065 13 2 892 901 0.623110388 0.629373756 0.626939334 2 -19.398773 495.1425 15 2 1181 1190 0.824885880 0.831145833 0.828711296 3 -19.425203 492.5874 16 4 1191 1200 0.831841464 0.838104659 0.835668547 3 3.263437 380.1028 17 3 1201 1210 0.838800087 0.845063426 0.844020175 3 -10.293195 483.2131 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.151332 1.303740 0.0010405118 1.55738165 0.0028180996 3.1410760 4 1.150247 1.300642 -0.0010111278 0.10372098 0.0029264491 3.2364730 5 1.150216 1.300592 0.0005170138 -3.02767087 0.0039433418 8.5139157 7 1.149865 1.299873 0.0013083471 0.05464672 0.0051195529 0.9844484 8 1.149740 1.299734 0.0019795638 -0.90094578 0.0064129647 3.0840777 9 1.149842 1.299823 -0.0011235020 -0.64000017 0.0007954951 1.4744706 10 1.149875 1.299863 0.0005162306 -0.90894033 0.0024527766 1.6894195 12 1.149053 1.298973 0.0018170656 -0.33738231 0.0052486180 2.7701135 13 1.149096 1.299012 0.0012100192 1.14173188 0.0055678583 4.6860754 15 1.148500 1.298464 -0.0004873175 0.34871842 0.0040923696 2.1435777 16 1.148458 1.298419 0.0029193332 0.40119499 0.0075877309 3.2076147 17 1.148404 1.298363 -0.0018557719 -1.74139654 0.0054431352 2.2675454 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.046 co2l1 = 0.948 co2l0 = -0.008" [1] "co2l0 = -197.5 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 200 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "124 out of 1262 1-min values rejected as stack air" [1] "124 out of 1262 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"