[1] "2025-04-30 00:51:32 MDT" [1] "1510" "151216" "d350" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151216a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:51:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.769" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.87, ave o2scale2 = 0.769" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:51:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:51:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:51:55 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:51:57 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:51:59 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 406.68 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 8.1 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 222 231 0.1549710 0.1612350 0.1587999 3 -19.415156 497.5293 3 4 232 241 0.1619336 0.1681967 0.1657596 3 3.270961 376.9100 4 5 242 251 0.1688921 0.1751551 0.1741118 NA -9.641969 451.5473 5 3 252 261 0.1758507 0.1821134 0.1810703 3 -10.272023 485.2009 7 4 522 531 0.3636679 0.3699361 0.3675012 2 3.325508 380.7990 8 2 532 541 0.3706362 0.3768994 0.3744644 2 -19.355664 491.2538 11 3 825 833 0.5863295 0.5925889 0.5918934 1 -10.211880 501.8639 13 4 1091 1100 0.7811250 0.7873843 0.7849502 2 3.334820 371.4898 14 2 1101 1110 0.7880799 0.7943395 0.7919055 2 -19.343086 492.9273 16 2 1391 1400 0.9898183 0.9960776 0.9936436 2 -19.346430 496.6200 17 4 1401 1405 0.9967732 0.9995555 0.9988599 2 3.326125 372.9426 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.148177 1.296255 -0.0003119703 -0.006123968 0.001318227 2.714911 3 1.148278 1.296387 0.0021426631 1.112586617 0.005885243 3.329053 4 1.148425 1.296565 -0.0035567203 -1.799942659 0.002519068 2.373402 5 1.148497 1.296656 0.0007338665 1.357121268 0.002713832 3.270189 7 1.149641 1.298039 0.0004168263 0.725021800 0.003833510 5.050292 8 1.149726 1.298151 -0.0007076123 0.847161566 0.003242942 2.400435 11 1.150582 1.310438 -0.0006562810 18.845677780 0.002347348 19.991764 13 1.151388 1.303737 0.0001820569 1.704339767 0.001698028 13.940352 14 1.151548 1.303801 -0.0008403158 1.200609223 0.003747311 16.329355 16 1.151378 1.303771 -0.0017853644 -0.888119434 0.007935878 7.060508 17 1.151403 1.303641 0.0090168252 16.340732548 0.009615864 17.103602 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.027 co2l1 = 0.948 co2l0 = -0.009" [1] "co2l0 = -197.88 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 130 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "67 out of 1265 1-min values rejected as stack air" [1] "67 out of 1265 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"