[1] "2025-04-30 00:50:59 MDT" [1] "1510" "151215" "d349" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151215a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:51:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.775" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.775" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:51:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:51:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:51:23 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:51:24 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:51:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.949 co2off = 403.18 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 160 169 0.1114919 0.1177554 0.1153212 2 3.174539 377.5820 3 2 170 179 0.1184507 0.1247106 0.1222761 2 -19.517383 489.9251 5 2 460 469 0.3201718 0.3264306 0.3239967 3 -19.456781 493.7280 6 4 470 479 0.3271300 0.3333889 0.3309550 3 3.228766 379.4857 7 3 480 489 0.3340845 0.3403439 0.3393009 3 -10.320414 485.4104 9 4 760 769 0.5288885 0.5351514 0.5327170 2 3.280102 378.6080 10 2 770 779 0.5358468 0.5421062 0.5396719 2 -19.418273 493.6420 12 2 1060 1069 0.7376192 0.7438824 0.7414466 3 -19.433680 492.9959 13 4 1070 1079 0.7445779 0.7508413 0.7484046 3 3.263938 380.1723 14 3 1080 1089 0.7515367 0.7577961 0.7567528 3 -10.279727 483.9688 16 4 1360 1369 0.9463031 0.9525623 0.9501280 2 3.264367 378.1162 17 2 1370 1379 0.9532577 0.9595174 0.9570833 2 -19.420578 493.3397 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.138654 1.284825 0.0018238127 0.30737981 0.006066681 1.7420482 3 1.138791 1.284987 0.0005802090 -0.13858559 0.004623725 0.8382548 5 1.140904 1.287554 -0.0023122487 0.55359230 0.006057666 2.8171062 6 1.140974 1.287638 -0.0001469755 0.04473734 0.006211286 3.7159768 7 1.141237 1.287928 0.0009221227 -1.49344129 0.004714498 2.0712941 9 1.143050 1.290162 -0.0001773761 -0.28735158 0.002516672 3.6951718 10 1.143206 1.290333 0.0017093586 0.02898722 0.007126640 2.8380196 12 1.145547 1.292992 0.0024268001 -0.60069098 0.006993734 2.3987248 13 1.145657 1.293109 0.0016373587 0.58768106 0.005109296 1.7509960 14 1.145860 1.293342 -0.0005074156 1.72296425 0.001959677 2.4125001 16 1.147184 1.294978 0.0001507792 0.68166600 0.002020110 3.7940075 17 1.147276 1.295073 0.0008514686 0.96485405 0.004839817 2.8460400 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.105 co2l1 = 0.948 co2l0 = -0.009" [1] "co2l0 = -200.39 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "60 out of 120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "60 out of 1279 1-min values rejected as stack air" [1] "60 out of 1279 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"