[1] "2025-04-30 00:50:27 MDT" [1] "1510" "151214" "d348" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151214a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:50:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.88, ave o2scale2 = 0.78" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:50:32 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:50:32 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:50:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:50:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:50:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 403.28 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 95 104 0.06801160 0.07427523 0.07183951 3 -19.514211 489.0821 3 4 105 114 0.07497066 0.08124071 0.07880209 3 3.189156 386.7025 4 3 115 124 0.08193634 0.08819919 0.08715613 3 -10.376844 473.7422 6 4 395 404 0.27672300 0.28299421 0.28055240 2 3.155484 379.3909 7 2 405 414 0.28368976 0.28994867 0.28751451 2 -19.536688 490.9072 9 2 695 704 0.48540833 0.49166736 0.48923321 3 -19.522445 493.7248 10 4 705 714 0.49236270 0.49862176 0.49618772 3 3.166961 379.6653 11 3 715 724 0.49931722 0.50557639 0.50453307 3 -10.393453 482.2316 13 4 995 1004 0.69411623 0.70037584 0.69794152 2 3.166992 382.2079 14 2 1005 1014 0.70107133 0.70733105 0.70489700 2 -19.519695 492.2016 16 2 1295 1304 0.90282870 0.90908837 0.90665393 3 -19.519703 496.1495 17 4 1305 1314 0.90978371 0.91604389 0.91360911 3 3.171687 379.5063 18 5 1315 1324 0.91673929 0.92299844 0.92195531 NA -9.762375 453.8465 19 3 1325 1334 0.92369387 0.92995356 0.92891027 3 -10.378609 484.6372 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.136187 1.281554 -1.543515e-03 -1.0835048 0.004864909 3.116567 3 1.136262 1.281651 2.240325e-03 4.6346279 0.007115909 12.568337 4 1.136330 1.281814 6.825940e-04 7.6666885 0.002853178 10.010741 6 1.137170 1.282711 -1.821232e-03 1.0869653 0.004876688 2.977522 7 1.137239 1.282784 -4.056543e-04 0.3559355 0.001869038 2.304912 9 1.137430 1.283131 -1.092781e-03 -0.3258563 0.004438372 1.574232 10 1.137257 1.282933 6.170075e-05 1.4814039 0.002748363 4.205281 11 1.137216 1.282898 -1.101152e-03 0.5120135 0.003368007 1.244606 13 1.136819 1.282562 9.352535e-04 0.4878435 0.003128647 2.178800 14 1.136921 1.282664 1.107812e-03 1.7491014 0.003517881 6.106978 16 1.137457 1.283317 -7.665632e-04 2.7664502 0.003017758 6.936695 17 1.137243 1.283075 1.986498e-03 0.5232443 0.006761399 1.951734 18 1.137609 1.283495 -1.997503e-03 1.8966888 0.001414214 2.531750 19 1.137708 1.283621 1.837983e-03 -2.7138499 0.004800687 3.674723 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.174 co2l1 = 0.948 co2l0 = -0.007" [1] "co2l0 = -204.22 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "211 out of 335 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "124 out of 1252 1-min values rejected as stack air" [1] "124 out of 1252 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"