[1] "2025-04-30 00:49:56 MDT" [1] "1510" "151213" "d347" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151213a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:50:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.785" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "218 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.785" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "220 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:50:00 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:50:00 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:50:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:50:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 220 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1216 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:50:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 395.94 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 7.94 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.08 minutes" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 6 [4,] 7 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 31 40 0.02405564 0.03036128 0.02791029 2 3.082492 382.2685 3 2 41 50 0.03106195 0.03733455 0.03490008 2 -19.631078 484.6219 5 2 308 316 0.23280182 0.23836574 0.23627937 3 -19.604464 491.8735 6 4 317 324 0.24114716 0.24601617 0.24427735 3 3.109937 391.9627 7 3 325 333 0.24740694 0.25297454 0.25227896 3 -10.454830 482.2353 9 4 549 554 0.44361499 0.44709251 0.44604917 1 3.141547 380.1210 11 2 733 740 0.65023657 0.65580090 0.65359821 3 -19.534692 483.3923 12 4 741 746 0.65719187 0.66206001 0.66032123 3 3.170438 380.8526 14 3 755 762 0.67110185 0.67737161 0.67702381 3 -10.380302 480.6831 16 4 1014 1023 0.85902520 0.86528472 0.86285041 2 3.206375 377.5925 17 2 1024 1033 0.86598032 0.87223961 0.86980561 2 -19.503328 496.1479 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.124588 1.267948 -0.0004227727 0.51624956 0.002580282 6.7911031 3 1.124772 1.268181 -0.0021160381 -0.33822651 0.006851889 8.3273882 5 1.127121 1.270752 0.0017854661 -0.07050566 0.004337316 2.3191802 6 1.127206 1.270992 0.0031559252 1.58970587 0.006150203 14.3641508 7 1.126933 1.270961 0.0014665875 -1.15611986 0.003553848 1.3127025 9 1.128934 1.272968 0.0003306936 0.34445075 0.001275138 1.2874923 11 1.132229 1.276861 -0.0016986014 -0.33169447 0.004053293 2.8637271 12 1.132570 1.277259 0.0025547702 -0.40083707 0.007898609 2.3163010 14 1.133480 1.278311 0.0001873814 -0.35101789 0.001805987 0.2486208 16 1.134633 1.279733 0.0010324871 1.00119178 0.006769895 2.9429199 17 1.134870 1.280001 -0.0019348209 0.86122441 0.005753565 2.5896090 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.203 co2l1 = 0.947 co2l0 = -0.008" [1] "co2l0 = -208.65 co2l1 = 0.24" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "98 out of 205 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "107 out of 1077 1-min values rejected as stack air" [1] "107 out of 1077 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"