[1] "2025-04-30 00:49:33 MDT" [1] "1510" "151212" "d346" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151212a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85738 63 [1] 85738 [1] 85738 [1] "testing skipping spike filter" [1] 85738 [1] 85738 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:49:37 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.793" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "568 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.793" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "570 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:49:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:49:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:49:47 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:49:48 MDT" [1] "reading in recalculated plot titles" [1] "Removed 570 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 857 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:49:51 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 399.26 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 6.01 minutes" [1] "Average Cal: 4.7 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 6 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 5 [4,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 12 15 0.04080871 0.04567708 0.04532938 1 3.047813 379.0260 6 4 150 157 0.24392020 0.24878869 0.24705001 2 3.043417 378.0983 7 2 158 164 0.25017948 0.25435240 0.25296160 2 -19.668412 496.5566 13 4 462 468 0.60720370 0.61137624 0.60998538 2 3.024800 378.1521 14 2 469 474 0.61485417 0.61972590 0.61798453 2 -19.702938 493.6475 16 2 625 634 0.81522731 0.82149074 0.81905493 2 -19.702516 493.7062 17 4 635 640 0.82218628 0.82844907 0.82670972 2 3.008875 379.1589 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.119282 1.261667 1.210835e-02 2.874678e-14 0.0085736697 0.000000 6 1.118464 1.260814 -6.989558e-04 6.896393e-01 0.0035601235 1.874432 7 1.118537 1.260775 3.057845e-04 1.865660e+00 0.0007120613 3.444402 13 1.117366 1.259789 1.198445e-03 9.303948e-02 0.0025759555 3.469989 14 1.117353 1.259683 -1.724047e-03 2.259379e+00 0.0044235402 5.556399 16 1.118911 1.261457 -1.688984e-03 -7.874541e-01 0.0046266587 4.629229 17 1.119028 1.261594 -9.237109e-05 8.407454e-01 0.0033201562 3.235571 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.313 co2l1 = 0.947 co2l0 = 0" [1] "co2l0 = -198.55 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "112 out of 741 1-min values rejected as stack air" [1] "112 out of 741 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"