[1] "2025-04-30 00:49:02 MDT" [1] "1510" "151211" "d345" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151211a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:49:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.896, ave o2scale2 = 0.795" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "449 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.896, ave o2scale2 = 0.795" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "448 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:49:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:49:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:49:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:49:26 MDT" [1] "reading in recalculated plot titles" [1] "Removed 448 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 988 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:49:28 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 403.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 8.01 minutes" [1] "Average Cal: 6.56 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 7 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 4 0.001174248 0.003260417 0.002912703 1 -19.800812 493.8159 3 2 194 203 0.198897106 0.205160532 0.202723434 3 -19.725164 492.0617 4 4 204 211 0.205855961 0.212115046 0.209680970 3 2.981937 377.5956 5 3 212 220 0.212810475 0.218374942 0.217679379 3 -10.585170 482.6969 7 4 452 461 0.407672483 0.413941088 0.411502217 2 3.026258 378.8029 8 2 462 471 0.414636719 0.420895862 0.418461755 2 -19.702523 494.1758 10 2 727 731 0.616408304 0.619189844 0.618494416 3 -19.698104 490.7015 11 4 732 740 0.624062182 0.629626100 0.627539377 3 3.010116 380.0399 13 3 745 754 0.637275984 0.643535359 0.642492289 3 -10.542156 482.6726 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.112285 1.253607 0.0008737622 -4.0742057 0.0006187184 2.884980 3 1.113271 1.254695 -0.0006719096 0.7653873 0.0029029960 3.020074 4 1.113274 1.254706 -0.0003134531 2.7331401 0.0029659876 8.181793 5 1.113107 1.254727 0.0017561224 4.2151116 0.0047292191 4.429661 7 1.114687 1.256317 -0.0012653864 0.9094877 0.0038173180 2.795250 8 1.114991 1.256632 0.0001642096 1.3941204 0.0025435794 3.787402 10 1.117428 1.259627 -0.0001248232 5.1559392 0.0006260408 5.279895 11 1.117253 1.259181 -0.0006329287 -0.1079105 0.0017056999 2.491953 13 1.117779 1.259807 0.0019391189 3.1408922 0.0063181110 4.134476 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.356 co2l1 = 0.947 co2l0 = -0.007" [1] "co2l0 = -200.34 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "71 out of 342 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "271 out of 872 1-min values rejected as stack air" [1] "271 out of 872 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"