[1] "2025-04-30 00:48:31 MDT" [1] "1510" "151210" "d344" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151210a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:48:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "240 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.9, ave o2scale2 = 0.799" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "239 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:48:36 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:48:36 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:48:53 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:48:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 239 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1196 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:48:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 403.44 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 6.68 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 9 [5,] 10 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 222 231 0.1547188 0.1609783 0.1585441 2 2.939078 377.2334 3 2 232 241 0.1616737 0.1679334 0.1654993 2 -19.802141 491.0872 5 2 510 519 0.3634804 0.3697789 0.3673296 3 -19.814031 493.2889 6 4 520 529 0.3704792 0.3767430 0.3743087 3 2.906961 375.7914 7 5 530 539 0.3774383 0.3836991 0.3826557 NA -10.020219 456.1982 8 3 540 549 0.3843945 0.3906709 0.3896213 3 -10.665195 478.6680 10 4 756 760 0.5757864 0.5785694 0.5778738 2 2.933917 380.3044 11 2 761 767 0.5792649 0.5855245 0.5837161 2 -19.784703 489.1963 13 2 987 991 0.7818194 0.7866885 0.7852974 1 -19.757911 492.3573 17 4 1192 1196 0.9921327 0.9949144 0.9942189 1 2.945125 371.5095 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.111093 1.252408 1.040161e-03 -0.2212010 0.003984169 4.1298410 3 1.110972 1.252288 -3.640779e-04 2.1007533 0.004395329 5.6251406 5 1.109783 1.250854 -3.780136e-04 -1.5040778 0.002054774 6.0511816 6 1.109828 1.250888 -8.553842e-05 0.2289218 0.004203917 2.7030454 7 1.109945 1.251016 -5.303661e-03 1.6965680 0.003756505 3.7985884 8 1.110026 1.251148 -7.493790e-04 1.0676500 0.002460727 5.5676569 10 1.110479 1.251373 2.683028e-03 -0.5159954 0.002699344 0.8982727 11 1.110576 1.251741 2.112483e-04 -1.4925755 0.001330501 3.1843645 13 1.111910 1.252881 -1.632392e-03 0.8781802 0.004536852 2.3698815 17 1.112831 1.254013 3.057843e-03 0.7366637 0.003213740 1.2488097 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.401 co2l1 = 0.947 co2l0 = -0.006" [1] "co2l0 = -202.82 co2l1 = 0.228" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 273 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "197 out of 1078 1-min values rejected as stack air" [1] "197 out of 1078 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"