[1] "2025-04-30 00:48:00 MDT" [1] "1510" "151209" "d343" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151209a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:48:04 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.895, ave o2scale2 = 0.794" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "0 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.895, ave o2scale2 = 0.794" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "0 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:48:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:48:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:48:22 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:48:23 MDT" [1] "reading in recalculated plot titles" [1] "TEMP: 1436 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:48:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 403.33 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 159 168 0.1112708 0.1175301 0.1150959 3 -19.588281 493.4601 3 4 169 178 0.1182257 0.1244850 0.1220508 3 3.117578 377.6695 4 5 179 188 0.1251806 0.1314398 0.1303965 NA -9.815156 453.2613 5 3 189 198 0.1321354 0.1383982 0.1373525 3 -10.463906 482.3658 7 4 459 468 0.3199420 0.3262010 0.3237668 2 3.065484 378.5363 8 2 469 478 0.3268970 0.3331562 0.3307220 2 -19.661734 494.2000 10 2 759 768 0.5285996 0.5348594 0.5324254 3 -19.686750 484.5502 11 4 769 778 0.5355548 0.5418147 0.5393803 3 3.028336 376.0239 12 3 779 788 0.5425102 0.5487697 0.5477264 3 -10.545086 480.8872 14 4 1059 1068 0.7373194 0.7435822 0.7411455 2 2.991547 398.0290 15 2 1069 1078 0.7442778 0.7505370 0.7481027 2 -19.739414 490.5773 17 2 1359 1368 0.9459892 0.9522488 0.9498146 3 -19.786820 486.9278 18 4 1369 1378 0.9529444 0.9592038 0.9567697 3 2.932813 378.7926 19 3 1379 1388 0.9598993 0.9661593 0.9651160 3 -10.638773 481.2322 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.121631 1.263868 1.856819e-04 0.16777203 0.0027345344 2.956651 3 1.121509 1.263739 -2.942245e-04 1.92330551 0.0025876919 5.360003 4 1.121406 1.263636 -3.681364e-03 3.10186854 0.0026074563 4.066718 5 1.121295 1.263523 7.714868e-05 2.13228313 0.0005011148 4.127388 7 1.118713 1.260765 -2.234581e-05 1.29909587 0.0029494911 3.734977 8 1.118650 1.260724 -5.482987e-03 -0.71865437 0.0140975456 3.618590 10 1.116965 1.258778 -9.138151e-04 0.61251375 0.0023988464 14.758463 11 1.116765 1.258644 1.091228e-03 0.84475190 0.0044738747 2.858909 12 1.116643 1.258533 1.508140e-04 3.09367754 0.0014118193 4.142191 14 1.114755 1.256396 9.739686e-05 -2.76913030 0.0032332587 23.087449 15 1.114644 1.256291 1.108408e-04 -0.02712379 0.0054945120 3.369922 17 1.112996 1.254497 1.794035e-03 -0.43690173 0.0056763959 3.560500 18 1.112811 1.254292 3.142191e-03 2.13690096 0.0080350099 5.837454 19 1.112787 1.254245 -2.269435e-03 -1.84035595 0.0061007115 2.537600 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.314 co2l1 = 0.947 co2l0 = -0.005" [1] "co2l0 = -205.7 co2l1 = 0.234" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "77 out of 105 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "28 out of 1254 1-min values rejected as stack air" [1] "28 out of 1254 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"