[1] "2025-04-30 00:46:57 MDT" [1] "1510" "151207" "d341" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151207a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:47:01 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.791" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "11 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.891, ave o2scale2 = 0.791" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:47:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:47:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:47:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:47:20 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1423 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:47:23 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.948 co2off = 399.19 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 33 42 0.02427431 0.03053380 0.02809951 3 -19.578016 493.5752 3 4 43 52 0.03122917 0.03749297 0.03505718 3 3.130242 392.9561 4 3 53 62 0.03818845 0.04444792 0.04340469 3 -10.438641 478.6031 6 4 328 337 0.23298203 0.23924181 0.23680756 2 3.137703 376.6136 7 2 338 346 0.23993944 0.24620020 0.24371631 2 -19.592424 490.2325 9 2 624 633 0.44165498 0.44791363 0.44547960 3 -19.536492 494.4809 10 4 634 643 0.44860969 0.45486846 0.45243448 3 3.177828 375.5110 11 3 644 653 0.45556386 0.46182318 0.46078023 3 -10.393555 482.4548 13 4 924 933 0.65034858 0.65662271 0.65418205 2 3.176687 381.6525 14 2 934 943 0.65732008 0.66358915 0.66115125 2 -19.538664 492.5523 16 2 1221 1230 0.85882292 0.86509661 0.86265651 3 -19.533484 491.1486 17 4 1231 1240 0.86579424 0.87206678 0.86962746 3 3.183750 377.4297 18 5 1241 1250 0.87276389 0.87903715 0.87799153 NA -9.763469 454.5456 19 3 1251 1260 0.87973495 0.88600816 0.88496211 3 -10.391891 482.1748 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.118100 1.260204 -1.714673e-03 0.9658966 0.004323388 8.384693 3 1.118026 1.260156 1.344176e-03 -2.0061431 0.004552942 17.065467 4 1.117960 1.260170 5.571418e-04 -3.4758433 0.002964776 6.092245 6 1.118689 1.260971 6.939781e-04 0.6582278 0.003087589 5.312740 7 1.118652 1.261033 -6.403880e-04 0.7030827 0.005582756 2.789415 9 1.122775 1.264966 5.832315e-04 0.7114333 0.001983874 2.624014 10 1.122827 1.265007 -9.212074e-05 0.5120607 0.002641688 1.952408 11 1.122948 1.265126 3.633881e-03 1.8891254 0.009109419 2.820250 13 1.124786 1.267123 -1.805031e-03 0.2896354 0.006049461 3.069107 14 1.124906 1.267257 -1.874713e-03 0.7125862 0.005610690 2.941155 16 1.126488 1.269060 -1.374097e-03 0.8115803 0.004631240 3.388118 17 1.126490 1.269055 3.890647e-03 1.2101268 0.010396868 4.311249 18 1.126569 1.269120 -7.037283e-03 -0.5304212 0.004993942 1.071004 19 1.126573 1.269142 9.634919e-05 -0.7710846 0.001174387 1.456819 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 403.186 co2l1 = 0.947 co2l0 = -0.006" [1] "co2l0 = -203.58 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "127 out of 317 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "190 out of 1242 1-min values rejected as stack air" [1] "190 out of 1242 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"