[1] "2025-04-30 00:46:26 MDT" [1] "1510" "151206" "d340" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151206a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:46:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.786" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "32 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.786" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "32 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:46:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:46:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:46:48 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:46:49 MDT" [1] "reading in recalculated plot titles" [1] "Removed 32 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1404 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:46:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 399.99 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.47 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Removed 1 anomalous calibration row(s)" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 272 281 0.1894203 0.1956836 0.1932494 3 -16.069977 484.5209 3 4 282 291 0.1963789 0.2026383 0.2002041 3 6.698836 372.4528 4 3 292 301 0.2033336 0.2095938 0.2085503 3 -6.916711 477.9568 6 4 572 581 0.3981065 0.4043730 0.4019350 2 6.639648 371.3457 7 2 582 591 0.4050684 0.4113280 0.4088939 2 -16.145875 486.0784 9 2 864 871 0.6075197 0.6123879 0.6106495 3 -16.239708 490.8489 10 4 872 881 0.6137796 0.6200428 0.6176059 3 6.544602 372.8151 12 3 889 898 0.6276933 0.6339560 0.6329113 3 -7.061391 476.2623 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.138718 1.282093 -2.575662e-03 0.6375583 0.006707034 2.653897 3 1.138536 1.281882 4.167089e-03 0.6844232 0.011042175 1.904306 4 1.138481 1.281843 -1.953663e-04 0.2063051 0.001554421 1.487447 6 1.134177 1.277026 2.779482e-03 1.1299302 0.007704137 3.394730 7 1.134074 1.276914 -1.294224e-03 0.7464272 0.003649395 2.302047 9 1.128524 1.270872 8.553376e-05 -0.9041637 0.001299439 2.353197 10 1.128290 1.270597 1.941627e-04 -0.6137313 0.005930394 5.390958 12 1.128516 1.270859 1.820225e-03 2.1617138 0.004710213 3.217659 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.92 co2l1 = 0.944 co2l0 = -0.017" [1] "co2l0 = -198.34 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "140 out of 374 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "234 out of 1269 1-min values rejected as stack air" [1] "234 out of 1269 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"