[1] "2025-04-30 00:46:03 MDT" [1] "1510" "151205" "d339" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151205a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85699 63 [1] 85699 [1] 85699 [1] "testing skipping spike filter" [1] 85699 [1] 85699 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:46:07 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.876, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.876, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 2 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "22 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:46:08 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:46:08 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:46:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:46:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 22 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 2 row(s) with variable TFCELL" [1] "TEMP: 1403 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:46:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 399.85 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.63 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 7 8 [4,] 9 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 216 225 0.1540623 0.1603214 0.1578872 2 6.793984 372.8396 3 2 226 235 0.1610168 0.1672766 0.1648422 2 -15.981930 490.7655 5 3 484 488 0.3581065 0.3608880 0.3615834 3 -6.871312 494.5057 6 2 489 498 0.3615833 0.3678431 0.3654090 3 -16.034187 492.6255 7 4 499 508 0.3685383 0.3747978 0.3723637 3 6.735180 372.9706 8 5 509 518 0.3754931 0.3817523 0.3807091 NA -7.052031 449.9974 10 4 779 788 0.5633137 0.5695729 0.5671390 2 6.746219 371.1728 11 2 789 798 0.5702685 0.5765277 0.5740934 2 -16.040570 487.1304 13 2 1076 1085 0.7720391 0.7782982 0.7758640 2 -16.032453 483.3857 14 4 1086 1095 0.7789936 0.7852568 0.7828225 2 6.740172 370.2882 17 4 1376 1385 0.9807218 0.9869885 0.9845511 2 6.776875 370.8974 18 2 1386 1395 0.9876840 0.9939472 0.9915107 2 -16.004867 485.8087 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.144537 1.288711 0.0007161423 -0.1028256 0.003623884 1.5466115 3 1.144388 1.288533 -0.0016276164 1.3807445 0.004547301 3.9192126 5 1.140626 1.284208 0.0012483096 6.2779180 0.001362156 12.0071059 6 1.140802 1.284236 -0.0004383186 3.4835664 0.002175349 9.7000112 7 1.140858 1.284338 0.0005624302 0.1803732 0.004639990 2.5668779 8 1.140946 1.284443 0.0033071259 -0.2557967 0.002342291 1.1635537 10 1.140999 1.284387 0.0009569970 0.2211107 0.003062773 0.9772855 11 1.141030 1.284440 -0.0038997028 1.1134642 0.009980642 3.0986860 13 1.141501 1.285081 -0.0013505826 0.7790295 0.004639667 6.2402320 14 1.141310 1.284833 0.0022600255 0.5450846 0.005998954 4.4253860 17 1.141224 1.284778 0.0004564743 1.3435639 0.005234458 3.9346464 18 1.141231 1.284797 0.0001793947 0.6499804 0.002484873 2.5932288 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.8 co2l1 = 0.944 co2l0 = -0.015" [1] "co2l0 = -196.5 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "184 out of 415 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "231 out of 1231 1-min values rejected as stack air" [1] "231 out of 1231 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"