[1] "2025-04-30 00:45:32 MDT" [1] "1510" "151204" "d338" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151204a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:45:36 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "43 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "43 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:45:37 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:45:37 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:45:54 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:45:55 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1393 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:45:58 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 396 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.59 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 130 134 0.1120185 0.1148009 0.1141053 3 -16.099208 495.5499 3 4 135 142 0.1182779 0.1238417 0.1221032 3 6.683546 371.5171 4 3 143 152 0.1245377 0.1307968 0.1297538 3 -6.923711 473.9413 6 4 415 424 0.3193063 0.3255685 0.3231346 2 6.780805 367.5981 7 2 425 434 0.3262640 0.3325236 0.3300896 2 -16.004195 486.5880 9 2 715 724 0.5280010 0.5342604 0.5318259 3 -15.977758 487.0243 10 4 725 734 0.5349560 0.5412188 0.5387816 3 6.785844 370.5704 11 3 735 744 0.5419144 0.5481735 0.5471302 3 -6.823352 479.1573 13 4 1015 1024 0.7366852 0.7429479 0.7405135 2 6.814891 373.5576 14 2 1025 1034 0.7436435 0.7499031 0.7474689 2 -15.962617 487.7809 16 2 1315 1324 0.9453572 0.9516164 0.9491822 3 -15.960344 483.8286 17 4 1325 1334 0.9523119 0.9585718 0.9561375 3 6.806547 369.4346 18 5 1335 1344 0.9592674 0.9655271 0.9644840 NA -6.249344 443.0724 19 3 1345 1354 0.9662229 0.9724861 0.9714427 3 -6.803750 471.8982 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.137628 1.280402 -1.591128e-03 -6.1064269 0.001622996 6.6749248 3 1.137905 1.280873 2.082358e-03 2.1987636 0.004279210 5.1812803 4 1.137988 1.280956 -4.688149e-04 0.9653249 0.002369575 1.5682694 6 1.137570 1.280478 -5.965635e-04 0.4114524 0.004904039 3.3878850 7 1.137614 1.280528 -3.194072e-03 1.7358826 0.011248782 4.4474118 9 1.140092 1.283381 -1.480460e-03 2.8947415 0.005805193 7.6057926 10 1.140048 1.283370 -3.018636e-04 -0.5740595 0.007299859 6.8989698 11 1.140282 1.283512 2.454862e-05 -4.5730332 0.001376597 7.7545596 13 1.143855 1.287793 1.905840e-03 -0.6943633 0.004766390 3.5310856 14 1.144061 1.288028 -1.020062e-03 -0.9649963 0.005382723 6.5717478 16 1.145491 1.289763 -1.552677e-03 -0.2762646 0.004687679 4.0085993 17 1.145426 1.289659 1.420564e-03 1.1139223 0.004334346 3.1163850 18 1.145421 1.289653 -6.303832e-03 -0.7557500 0.004463612 0.9859768 19 1.145354 1.289616 1.157374e-03 -0.5517292 0.004510157 2.3666067 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.781 co2l1 = 0.944 co2l0 = -0.014" [1] "co2l0 = -196.61 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "16 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "34 out of 1218 1-min values rejected as stack air" [1] "34 out of 1218 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"