[1] "2025-04-30 00:45:02 MDT" [1] "1510" "151203" "d337" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151203a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:45:06 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.793" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "199 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.793" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "200 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:45:06 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:45:06 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:45:24 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:45:25 MDT" [1] "reading in recalculated plot titles" [1] "Removed 200 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1236 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:45:27 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 396.05 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 94 103 0.06719907 0.07346296 0.07102692 2 6.361281 374.1815 3 2 104 113 0.07415842 0.08041782 0.07798354 2 -16.436937 489.6500 7 2 394 403 0.27588906 0.28215229 0.27971504 3 -16.495609 485.4609 8 4 404 413 0.28284763 0.28911076 0.28667452 3 6.301953 368.1136 9 3 414 423 0.28980593 0.29606554 0.29502221 3 -7.331445 475.4232 11 4 608 617 0.48455952 0.49081944 0.48838478 2 6.326141 361.9889 12 2 618 627 0.49151496 0.49777384 0.49533970 2 -16.474703 475.6723 14 2 900 909 0.69324884 0.69950874 0.69707442 3 -16.312187 494.0139 15 4 910 919 0.70020411 0.70646756 0.70403178 3 6.477766 375.5132 16 5 920 929 0.70716305 0.71342245 0.71237925 NA -6.487500 442.1160 17 3 930 939 0.71411806 0.72038093 0.71933788 3 -7.133383 485.8192 19 4 1140 1148 0.90194207 0.90820139 0.90601542 2 6.622177 377.2992 20 2 1149 1156 0.90889693 0.91515619 0.91272188 2 -16.161781 483.4767 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.116622 1.254170 9.882630e-04 2.2247080 0.003307189 6.075040 3 1.116711 1.254240 -1.038516e-03 1.4919102 0.003389684 4.345963 7 1.113035 1.249883 -3.035885e-03 -2.1816510 0.008292151 6.012536 8 1.112815 1.249663 2.463966e-03 2.2146073 0.006462698 5.561338 9 1.112751 1.249605 -1.018470e-03 0.3742475 0.003041645 1.408629 11 1.115182 1.258768 8.465592e-05 4.2978797 0.002749543 13.215360 12 1.115322 1.258714 -7.057307e-04 1.6619815 0.002551643 11.128909 14 1.125554 1.270059 3.729066e-04 -1.6039756 0.003029063 11.627937 15 1.125776 1.270418 1.015942e-03 5.1052442 0.005882286 14.499011 16 1.126086 1.270503 -4.493073e-03 11.5532789 0.003181981 15.522936 17 1.126159 1.270427 -3.318972e-04 4.4233242 0.001627552 13.513625 19 1.133051 1.275418 2.166709e-03 -0.1519225 0.005564760 12.205466 20 1.133190 1.275557 -1.579612e-03 -0.3453546 0.005297516 4.646341 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 400.124 co2l1 = 0.944 co2l0 = -0.011" [1] "co2l0 = -198.76 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "80 out of 320 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "240 out of 1068 1-min values rejected as stack air" [1] "216 out of 1010 Line 1 1-min values rejected as stack air" [1] "24 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"