[1] "2025-04-30 00:44:30 MDT" [1] "1510" "151202" "d336" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151202a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:44:35 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.788" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "7 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.788" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:44:35 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:44:35 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:44:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:44:54 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:44:57 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 406.71 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.73 minutes" [1] "Shortest Cal: 5.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 32 41 0.02373194 0.02999537 0.02755917 3 -16.107688 486.2487 3 4 42 51 0.03069091 0.03695370 0.03451869 3 6.665227 373.7227 4 3 52 61 0.03764931 0.04390894 0.04286594 3 -6.963336 472.6360 6 4 332 337 0.23242480 0.23590188 0.23485889 2 6.676047 373.6236 7 2 338 347 0.23937928 0.24563889 0.24320454 2 -16.113109 480.5436 9 2 628 637 0.44111806 0.44737731 0.44494311 3 -16.176945 482.6639 10 4 638 647 0.44807274 0.45433565 0.45190150 3 6.606531 372.9476 11 5 648 657 0.45503122 0.46129051 0.46024720 NA -6.359781 438.5365 12 3 658 667 0.46198605 0.46824884 0.46720320 3 -6.999234 480.9869 14 4 928 937 0.64979696 0.65605671 0.65362260 2 6.528875 368.0973 15 2 938 947 0.65675223 0.66301163 0.66057751 2 -16.265109 483.5865 17 2 1227 1236 0.85851852 0.86478171 0.86234501 3 -16.347906 486.2547 18 4 1237 1246 0.86547708 0.87173628 0.86930234 3 6.442227 372.9560 19 3 1247 1256 0.87243183 0.87869198 0.87764869 3 -7.176641 475.6705 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.136125 1.276534 2.958485e-06 -2.0149978 0.001319497 8.9312935 3 1.135996 1.276425 1.458068e-04 1.3074429 0.005615561 3.6812602 4 1.135935 1.276381 -9.039510e-04 0.1434181 0.003741201 2.3091159 6 1.135859 1.276176 -6.554168e-04 5.1749224 0.002805025 7.5441853 7 1.135839 1.276109 4.323979e-04 2.2094155 0.003333031 6.4303520 9 1.132684 1.272693 -8.863186e-04 0.9671698 0.003274195 4.6442062 10 1.132482 1.272458 3.891846e-03 -0.1131536 0.010386611 4.2270695 11 1.132255 1.272177 -1.934276e-03 -2.3795820 0.001370019 3.6156048 12 1.132115 1.272037 -1.973945e-04 0.2778073 0.001661254 0.4622673 14 1.127762 1.267133 -2.526207e-03 1.9680440 0.007539405 7.7073490 15 1.127622 1.266961 -1.991692e-04 2.8779793 0.001631768 7.6765280 17 1.120795 1.259151 -7.115539e-04 0.6630246 0.002918154 3.4634526 18 1.120536 1.258835 3.315851e-03 1.2721698 0.008340811 3.7624350 19 1.120396 1.258681 -7.459802e-04 -2.7569287 0.004535543 3.7798950 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.965 co2l1 = 0.944 co2l0 = -0.015" [1] "co2l0 = -200.52 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "68 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "157 out of 1249 1-min values rejected as stack air" [1] "157 out of 1249 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"