[1] "2025-04-30 00:43:58 MDT" [1] "1510" "151201" "d335" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151201a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:44:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "80 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "80 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:44:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:44:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:44:21 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:44:23 MDT" [1] "reading in recalculated plot titles" [1] "Removed 80 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1356 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:44:26 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 399.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 209 218 0.1889112 0.1951711 0.1927364 3 -16.192680 487.1330 3 4 219 228 0.1958668 0.2021259 0.1996916 3 6.588750 373.0677 4 5 229 238 0.2028212 0.2090845 0.2080411 NA -6.382094 445.2300 5 3 239 248 0.2097799 0.2160394 0.2149960 3 -7.019625 472.9338 7 4 495 504 0.3975926 0.4038555 0.4014179 2 6.606719 369.5174 8 2 505 514 0.4045509 0.4108103 0.4083760 2 -16.169375 493.4503 10 2 794 803 0.6062812 0.6125407 0.6101065 3 -16.136102 488.3183 11 4 804 813 0.6132361 0.6194954 0.6170613 3 6.645695 375.1973 12 3 814 823 0.6201910 0.6264537 0.6254094 3 -6.977914 466.4707 14 4 1093 1102 0.8150417 0.8213052 0.8188700 2 6.652195 363.4175 15 2 1103 1112 0.8220005 0.8282638 0.8258293 2 -16.126172 486.1593 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.128616 1.267628 -0.0027807149 1.84071043 0.007310663 4.964198 3 1.128724 1.267747 0.0033401298 -0.52026840 0.008967078 3.596258 4 1.128923 1.267978 -0.0040560779 -0.13272768 0.002872621 1.961298 5 1.128999 1.268073 -0.0029863517 1.15233063 0.007395854 1.531682 7 1.129279 1.268480 -0.0003891846 0.06215848 0.002974220 3.063395 8 1.129484 1.268677 0.0006939805 -4.55921957 0.005221329 16.575645 10 1.131777 1.271340 -0.0008654986 1.82946481 0.002651848 5.460167 11 1.131660 1.271245 0.0035121747 -1.02025900 0.009271057 3.873170 12 1.132060 1.271705 -0.0028474596 -1.20077102 0.008262702 2.513029 14 1.134390 1.274532 -0.0016825970 -0.21448019 0.004727323 2.594117 15 1.134679 1.274845 0.0017454456 -0.07091725 0.005543331 1.486510 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.926 co2l1 = 0.944 co2l0 = -0.013" [1] "co2l0 = -196.69 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "63 out of 204 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "141 out of 1214 1-min values rejected as stack air" [1] "141 out of 1214 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"