[1] "2025-04-30 00:43:27 MDT" [1] "1510" "151130" "d334" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151130a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:43:31 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.887, ave o2scale2 = 0.79" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.887, ave o2scale2 = 0.79" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "29 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:43:31 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:43:31 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:43:49 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:43:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 29 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1407 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:43:53 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 395.98 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.68 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 208 217 0.1454658 0.1517250 0.1492910 2 6.637391 371.5497 3 2 218 227 0.1524204 0.1586799 0.1562458 2 -16.156281 482.8812 5 2 507 516 0.3541453 0.3604049 0.3579707 3 -16.230391 482.0694 6 4 517 526 0.3611002 0.3673645 0.3649292 3 6.551117 370.1822 7 3 527 536 0.3680625 0.3743218 0.3732784 3 -7.069469 479.0404 9 4 799 807 0.5628409 0.5690998 0.5669142 2 6.544636 371.6951 10 2 808 817 0.5697952 0.5760583 0.5736218 2 -16.259367 484.8263 12 2 1092 1099 0.7729277 0.7777998 0.7760591 3 -16.221615 485.4953 13 4 1100 1109 0.7784954 0.7847546 0.7823204 3 6.574766 372.8981 14 3 1110 1118 0.7854502 0.7917095 0.7910140 3 -7.052765 480.6375 16 4 1382 1390 0.9802117 0.9864710 0.9839869 2 6.604283 366.7062 17 2 1391 1398 0.9885571 0.9934339 0.9916897 2 -16.187521 488.4527 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.129334 1.268563 -0.0001709170 0.60903580 0.001879682 3.037456 3 1.129199 1.268401 -0.0016745597 0.85369067 0.004794551 5.421256 5 1.125844 1.264533 -0.0022258846 0.30092606 0.005634194 3.702020 6 1.125667 1.264316 0.0004759710 0.61107346 0.003410435 4.537892 7 1.125647 1.264280 -0.0027415949 -1.93781090 0.007200028 2.593828 9 1.125134 1.263532 0.0004448521 1.50124186 0.005489433 4.293228 10 1.125038 1.263485 0.0007450188 -0.03142272 0.004734519 4.796776 12 1.127658 1.266492 -0.0012227091 0.90869241 0.002874298 2.475697 13 1.127684 1.266519 0.0040862365 0.82802972 0.011032812 3.493096 14 1.127827 1.266881 -0.0002877344 2.13363722 0.001568548 2.173113 16 1.128553 1.267651 -0.0007015052 0.69683516 0.004021547 2.301747 17 1.129027 1.268088 -0.0009690990 0.29958099 0.003103845 1.440206 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.97 co2l1 = 0.944 co2l0 = -0.012" [1] "co2l0 = -197.84 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "76 out of 280 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "204 out of 1257 1-min values rejected as stack air" [1] "204 out of 1257 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"