[1] "2025-04-30 00:42:56 MDT" [1] "1510" "151129" "d333" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151129a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:43:00 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.886, ave o2scale2 = 0.789" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "42 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.886, ave o2scale2 = 0.789" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "42 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:43:01 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:43:01 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:43:18 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:43:19 MDT" [1] "reading in recalculated plot titles" [1] "Removed 43 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1393 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:43:22 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 400.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 145 154 0.1019590 0.1082222 0.1057856 3 -16.168742 485.4752 3 4 155 164 0.1089177 0.1151773 0.1127428 3 6.619891 366.4270 4 3 165 174 0.1158728 0.1221353 0.1210918 3 -6.998234 475.4294 6 4 444 453 0.3106626 0.3169258 0.3144899 2 6.609828 367.2551 7 2 454 463 0.3176211 0.3238807 0.3214462 2 -16.192500 488.5673 10 2 744 753 0.5193484 0.5256081 0.5231739 3 -16.185234 484.5564 11 4 754 763 0.5263035 0.5325630 0.5301287 3 6.611781 372.0732 12 3 764 773 0.5332584 0.5395215 0.5384774 3 -6.998523 477.4381 14 4 1044 1053 0.7280799 0.7343430 0.7319055 2 6.625320 374.3253 15 2 1054 1063 0.7350384 0.7412979 0.7388637 2 -16.165992 486.4027 17 2 1303 1312 0.9367772 0.9430366 0.9406024 3 -16.132398 481.3956 18 4 1313 1322 0.9437320 0.9499919 0.9475574 3 6.659914 367.9254 19 5 1323 1332 0.9506872 0.9569467 0.9559034 NA -6.410937 438.9660 20 3 1333 1342 0.9576421 0.9639051 0.9628618 3 -6.948609 476.6596 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.128074 1.267371 -0.0029725402 0.7748155 0.007562495 2.360600 3 1.128080 1.267369 0.0004277372 0.3823074 0.004462111 2.016349 4 1.128105 1.267383 0.0011104688 2.8501281 0.003161175 3.771777 6 1.126636 1.265448 -0.0004050178 -0.7533791 0.003658672 9.786641 7 1.126876 1.265645 -0.0015570028 -0.9474998 0.004864343 3.531094 10 1.128559 1.267592 -0.0016269054 0.5611335 0.005935173 3.288591 11 1.128617 1.267653 0.0049359481 0.7764558 0.012886264 4.185584 12 1.128745 1.267801 -0.0011886792 3.0291934 0.003536944 4.212965 14 1.130089 1.269373 0.0024643771 1.6073356 0.006406038 4.228943 15 1.130167 1.269463 -0.0019473131 0.5285757 0.006454203 3.920199 17 1.132309 1.271611 -0.0026202106 -0.3579312 0.006683113 1.113549 18 1.132320 1.271651 0.0035353707 0.4313322 0.009982459 3.676109 19 1.132468 1.271864 -0.0036194201 -4.5323174 0.002563262 6.935407 20 1.132528 1.271860 -0.0005597022 1.5134321 0.002822255 2.237957 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.926 co2l1 = 0.944 co2l0 = -0.02" [1] "co2l0 = -196.75 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "71 out of 325 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "254 out of 1209 1-min values rejected as stack air" [1] "236 out of 1175 Line 1 1-min values rejected as stack air" [1] "18 out of 34 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"