[1] "2025-04-30 00:42:46 MDT" [1] "1510" "151128" "d332" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151128a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 27900 63 [1] 27900 [1] 27900 [1] "testing skipping spike filter" [1] 27900 [1] 27900 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:42:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.784" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.881, ave o2scale2 = 0.784" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "16 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:42:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:42:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:42:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:42:51 MDT" [1] "reading in recalculated plot titles" [1] "Removed 16 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 448 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:42:52 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 399.93 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.01 minutes" [1] "Shortest Cal: 3.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 5 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 1 3 1 4 0.6872963 0.6893849 0.6914713 3 -6.823031 495.4877 1.137694 2 2 5 14 0.6914713 0.6977315 0.6952969 3 -15.990914 489.6596 1.137961 3 4 15 24 0.6984271 0.7046870 0.7022527 3 6.784477 379.7384 1.138213 4 5 25 34 0.7053825 0.7116453 0.7106022 NA -6.274031 444.3021 1.138267 6 4 295 304 0.8932751 0.8995347 0.8971002 2 6.745727 370.6283 1.134386 7 2 305 314 0.9002304 0.9064902 0.9040555 2 -16.051180 487.4059 1.134337 jfcv2 co2slp o2slp co2sd o2sd 1 1.277956 6.224325e-05 -3.8469317 4.419417e-05 10.525138 2 1.278336 -9.812677e-04 1.9896973 3.672554e-03 6.072264 3 1.278691 1.030376e-03 0.7667591 3.035309e-03 8.447733 4 1.278827 -1.685393e-03 1.1999686 1.193243e-03 1.953085 6 1.274423 -5.459892e-04 0.3890988 3.232773e-03 3.583594 7 1.274344 -2.905290e-04 3.4479801 2.214108e-03 9.681953 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.793 co2l1 = 0.944 co2l0 = -0.017" [1] "co2l0 = -196.95 co2l1 = 0.215" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "31 out of 129 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "98 out of 369 1-min values rejected as stack air" [1] "98 out of 369 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"