[1] "2025-04-30 00:42:16 MDT" [1] "1510" "151127" "d331" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151127a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:42:20 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.779" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:42:20 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:42:20 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:42:37 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:42:38 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1415 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:42:41 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 399.78 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 7 16 0.006612269 0.01287159 0.01043726 3 -16.052109 487.3471 3 4 17 26 0.013567072 0.01982758 0.01739266 3 6.752750 369.6245 4 3 27 36 0.020523206 0.02678356 0.02574004 3 -6.850477 472.0350 6 4 307 316 0.215361487 0.22162153 0.21918740 2 6.817078 371.2050 7 2 317 326 0.222317130 0.22857642 0.22614216 2 -15.969352 486.9287 9 2 597 606 0.424059404 0.43031855 0.42788445 3 -15.888211 482.3250 10 4 607 616 0.431014902 0.43727668 0.43484044 3 6.890734 374.0058 11 3 617 626 0.437972251 0.44423440 0.44319087 3 -6.724961 472.7999 13 4 895 904 0.632740336 0.63900000 0.63656583 2 6.900906 368.1069 14 2 905 914 0.639695515 0.64595472 0.64352046 2 -15.870273 482.9547 16 2 1193 1202 0.841483854 0.84774601 0.84531187 3 -15.847180 490.7979 17 4 1203 1212 0.848441493 0.85470127 0.85226700 3 6.926148 370.9363 18 5 1213 1222 0.855396730 0.86165964 0.86061630 NA -5.842719 435.4162 19 3 1223 1232 0.862358796 0.86861811 0.86757467 3 -6.697875 474.1994 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.133131 1.271905 -1.221248e-03 0.369547464 0.0059749057 3.5380733 3 1.133024 1.271795 2.709825e-03 1.095335309 0.0075657092 3.2647477 4 1.133294 1.272103 -1.681131e-03 1.696692249 0.0057690811 2.6851924 6 1.138478 1.278343 1.798355e-04 1.667478970 0.0023255544 5.2064093 7 1.138627 1.278501 -1.577181e-03 0.592030274 0.0044835933 3.8120444 9 1.144046 1.284928 -2.994282e-04 2.408626580 0.0012132718 8.0457989 10 1.144167 1.285030 3.971201e-04 -0.213716947 0.0061138519 8.1036714 11 1.144169 1.285029 8.249131e-05 0.448326015 0.0019568268 0.7348778 13 1.146120 1.287548 -9.554620e-04 0.715145749 0.0038051011 3.0518353 14 1.146322 1.287810 -7.020557e-04 0.001659714 0.0028588322 4.8494069 16 1.149122 1.291044 -1.669293e-03 1.620150431 0.0067082403 6.2036083 17 1.149035 1.290968 1.058504e-03 1.972284460 0.0085467424 5.9965851 18 1.149208 1.291168 -5.616341e-04 -2.804439578 0.0003977476 4.1549710 19 1.149163 1.291139 -6.641253e-04 0.244453387 0.0031364077 0.7018327 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.704 co2l1 = 0.944 co2l0 = -0.016" [1] "co2l0 = -198.47 co2l1 = 0.222" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "91 out of 263 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "172 out of 1233 1-min values rejected as stack air" [1] "172 out of 1233 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"