[1] "2025-04-30 00:41:42 MDT" [1] "1510" "151126" "d330" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151126a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:41:47 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.789" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "2 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.789" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "2 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:41:47 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:41:47 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:42:06 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:42:07 MDT" [1] "reading in recalculated plot titles" [1] "Removed 2 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1434 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:42:11 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 399.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 246 255 0.1716250 0.1778848 0.1754503 3 -16.061070 478.5882 3 4 256 265 0.1785802 0.1848438 0.1824073 3 6.726656 370.5706 4 3 266 275 0.1855393 0.1917986 0.1907552 3 -6.891430 476.5759 6 4 545 554 0.3803402 0.3866006 0.3841664 2 6.759305 369.3560 7 2 555 564 0.3872964 0.3935643 0.3911271 2 -16.053234 483.2025 9 2 845 854 0.5891331 0.5953923 0.5929581 3 -16.040609 487.9479 10 4 855 864 0.5960880 0.6023473 0.5999131 3 6.755492 364.5460 11 5 865 874 0.6030429 0.6093072 0.6082625 NA -6.262188 446.6476 12 3 875 884 0.6100032 0.6162622 0.6152191 3 -6.868656 472.5480 14 4 1145 1154 0.7979259 0.8041853 0.8017509 2 6.745914 370.7425 15 2 1155 1164 0.8048814 0.8111405 0.8087064 2 -16.051336 481.8685 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.128887 1.267258 -2.550474e-03 -0.6076379 0.006414569 5.557897 3 1.128861 1.267229 1.599842e-04 0.1963173 0.003841299 3.110061 4 1.128972 1.267360 1.841734e-03 0.3365687 0.005255040 1.201128 6 1.130133 1.268307 -3.350159e-05 2.1148399 0.002525415 6.103520 7 1.130167 1.268359 -1.679326e-03 1.8330122 0.004765687 6.740868 9 1.130782 1.269121 1.331318e-03 0.2560306 0.004242476 3.705629 10 1.130615 1.268951 4.029267e-03 0.1048719 0.011258055 3.579599 11 1.130752 1.269126 -5.110733e-03 1.6291384 0.003623922 2.179099 12 1.130754 1.269117 1.212457e-03 0.6504531 0.003444230 1.783534 14 1.130182 1.268431 -6.190073e-04 1.5146976 0.006090733 5.188815 15 1.130349 1.268607 -1.311353e-03 0.2636723 0.004748348 2.077823 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.815 co2l1 = 0.943 co2l0 = -0.015" [1] "co2l0 = -197.99 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "45 out of 195 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "150 out of 1292 1-min values rejected as stack air" [1] "150 out of 1292 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"