[1] "2025-04-30 00:41:12 MDT" [1] "1510" "151125" "d329" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151125a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85920 63 [1] 85920 [1] 85920 [1] "testing skipping spike filter" [1] 85920 [1] 85920 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:41:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.896, ave o2scale2 = 0.799" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.896, ave o2scale2 = 0.799" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:41:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:41:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:41:34 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:41:35 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1430 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:41:38 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 399.94 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 183 192 0.1283823 0.1346424 0.1322079 2 6.639883 369.6577 3 2 193 202 0.1353379 0.1416008 0.1391663 2 -16.169234 483.1281 6 2 483 492 0.3370613 0.3433268 0.3408902 3 -16.242766 487.8169 7 4 493 502 0.3440231 0.3502829 0.3478485 3 6.554578 369.1914 8 5 503 512 0.3509786 0.3572378 0.3561947 NA -6.408031 444.5954 9 3 513 522 0.3579331 0.3641924 0.3631495 3 -7.072031 471.3731 11 4 783 792 0.5457271 0.5519862 0.5495522 2 6.605523 374.4144 12 2 793 802 0.5526818 0.5589410 0.5565071 2 -16.195359 487.3101 14 2 1078 1087 0.7542100 0.7604815 0.7580440 3 -16.151844 489.5021 15 4 1088 1097 0.7611769 0.7674376 0.7650020 3 6.663367 370.4711 16 3 1098 1107 0.7681319 0.7743912 0.7733480 3 -6.954406 471.1872 18 4 1378 1387 0.9629139 0.9691731 0.9667389 2 6.722039 368.1147 19 2 1388 1397 0.9698685 0.9761282 0.9736939 2 -16.087250 482.9706 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.115110 1.251184 0.0010065566 1.9513275 0.003406014 5.806152 3 1.114937 1.251004 -0.0033493253 1.0990877 0.008353167 5.216624 6 1.110168 1.245071 -0.0023665656 1.5047175 0.006299691 3.913772 7 1.110273 1.245192 0.0007651327 0.8325758 0.002687760 6.346250 8 1.110474 1.245395 -0.0034324943 0.4736368 0.002430680 3.368981 9 1.110499 1.245448 -0.0002407021 1.4737796 0.003718018 2.456423 11 1.113931 1.249434 0.0018671954 0.7698584 0.005216939 3.458918 12 1.114184 1.249712 -0.0038204497 0.2915026 0.010106892 2.455339 14 1.119459 1.256263 0.0008365363 0.3801561 0.002226314 2.491516 15 1.119646 1.256454 0.0015661869 2.2998367 0.006862118 6.606774 16 1.120010 1.256869 -0.0014042799 1.7962334 0.003976213 2.535929 18 1.125080 1.262896 -0.0011254974 0.4026790 0.004582325 4.144562 19 1.125214 1.263078 -0.0009894714 0.7485888 0.005115627 3.723820 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.92 co2l1 = 0.943 co2l0 = -0.017" [1] "co2l0 = -198.16 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "19 out of 100 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "81 out of 1261 1-min values rejected as stack air" [1] "60 out of 1022 Line 1 1-min values rejected as stack air" [1] "21 out of 239 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"