[1] "2025-04-30 00:40:41 MDT" [1] "1510" "151124" "d328" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151124a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:40:45 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.797" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "9 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.894, ave o2scale2 = 0.797" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "9 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:40:45 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:40:45 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:41:03 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:41:04 MDT" [1] "reading in recalculated plot titles" [1] "Removed 9 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1427 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:41:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.943 co2off = 406.63 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 119 128 0.08479523 0.09105451 0.08862045 3 -16.222703 486.1664 3 4 129 134 0.09175003 0.09802138 0.09558100 3 6.576656 375.1032 4 5 135 144 0.09871889 0.10498148 0.10393806 NA -6.419094 448.5402 5 3 145 154 0.10567700 0.11193623 0.11089293 3 -7.049648 460.3889 7 4 413 422 0.29349459 0.29975752 0.29732014 2 6.685422 367.1020 8 2 423 432 0.30045292 0.30671181 0.30427793 2 -16.107344 483.7806 10 2 713 722 0.50219447 0.50845370 0.50601977 3 -16.097055 481.7724 11 4 723 732 0.50914931 0.51540856 0.51297434 3 6.702648 366.3146 12 3 733 742 0.51610417 0.52236314 0.52131992 3 -6.906906 463.1298 14 4 1012 1021 0.71100347 0.71726363 0.71482918 2 6.695805 369.1857 15 2 1022 1031 0.71795883 0.72421875 0.72178417 2 -16.120320 485.1591 17 2 1312 1321 0.91970943 0.92597260 0.92353523 3 -16.126563 482.2181 18 4 1322 1331 0.92666788 0.93292749 0.93049326 3 6.671836 372.9795 19 3 1332 1341 0.93362309 0.93988620 0.93884121 3 -6.959336 473.8041 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.113835 1.249626 -2.783186e-03 1.40468825 0.006913185 6.114605 3 1.114029 1.249813 8.947093e-04 -1.80897181 0.004217554 8.748702 4 1.114347 1.250176 -5.553245e-03 1.00146683 0.003933281 2.909777 5 1.114476 1.250338 2.407724e-03 -7.80058600 0.006080188 10.791644 7 1.118807 1.254922 5.187619e-03 4.09485043 0.012910654 13.867426 8 1.119013 1.255234 2.555355e-04 0.20613900 0.002903777 7.995182 10 1.119987 1.256359 1.073567e-03 1.43174486 0.002770709 4.341602 11 1.119934 1.256311 2.336543e-03 0.42928492 0.007059215 1.603105 12 1.120024 1.256378 4.445832e-03 0.01359087 0.011139687 1.182641 14 1.119056 1.255424 -1.388405e-03 -0.87724474 0.005176940 2.768145 15 1.118941 1.255319 -5.868378e-05 0.70632702 0.004777930 4.536909 17 1.118546 1.254892 -1.144518e-03 1.68775676 0.004013649 5.414938 18 1.118360 1.254666 1.492622e-03 1.42817853 0.004856643 5.516119 19 1.118467 1.254785 4.663291e-04 -2.11232520 0.003186176 3.833612 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.89 co2l1 = 0.943 co2l0 = -0.016" [1] "co2l0 = -199.93 co2l1 = 0.226" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1249 1-min values rejected as stack air" [1] "0 out of 1249 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"