[1] "2025-04-30 00:39:37 MDT" [1] "1510" "151122" "d326" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151122a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:39:41 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "29 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.875, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "30 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:39:42 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:39:42 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:39:59 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:40:01 MDT" [1] "reading in recalculated plot titles" [1] "Removed 30 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:40:05 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 395.61 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.38 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Removed 1 calibration row(s) with high SL" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 7 [4,] 8 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 4 0.001811719 0.003898119 0.003550333 2 -15.768375 500.9369 3 3 15 24 0.011554398 0.017853096 0.016803653 2 -6.595477 466.9570 5 4 281 289 0.206458333 0.212021991 0.209935681 2 6.978205 371.7959 6 2 290 299 0.213414873 0.219674769 0.217241023 2 -15.819656 495.0207 8 2 578 587 0.415134317 0.421395313 0.418959762 3 -15.871281 480.2371 9 4 588 597 0.422093056 0.428355990 0.425919050 3 6.918398 375.5443 10 3 598 607 0.429051591 0.435311082 0.434267629 3 -6.703797 467.1002 12 4 877 885 0.623818403 0.630081308 0.627994775 2 6.934021 366.8087 13 2 886 895 0.630776736 0.637036285 0.634602253 2 -15.861695 484.5752 15 2 1173 1182 0.832531250 0.838790885 0.836356735 2 -15.842039 490.2313 16 4 1183 1191 0.839486429 0.845745486 0.843361173 2 6.943521 375.5033 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.149415 1.286394 -0.0002495944 5.1945333 0.0001767767 3.679059 3 1.149130 1.286111 0.0006385084 18.2242703 0.0032746213 25.358285 5 1.144758 1.281836 0.0008002336 -4.0085523 0.0030163863 13.598642 6 1.144768 1.281588 -0.0038771751 0.8373370 0.0098047911 10.663894 8 1.140079 1.276448 -0.0026503796 2.6472340 0.0076087356 8.683335 9 1.140044 1.276399 0.0003629644 4.5446988 0.0053688646 18.435533 10 1.140081 1.276464 -0.0001663514 -7.7631619 0.0041200931 12.349377 12 1.140030 1.276185 0.0012096640 0.1872045 0.0031953981 5.975225 13 1.140361 1.276643 -0.0035371284 1.5046938 0.0091966025 4.992121 15 1.142893 1.279477 -0.0008713889 -1.4182117 0.0039071160 7.977395 16 1.142713 1.279377 0.0016424247 -0.8321003 0.0071216864 13.491569 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.605 co2l1 = 0.943 co2l0 = -0.015" [1] "co2l0 = -184.56 co2l1 = 0.192" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "40 out of 160 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "120 out of 1237 1-min values rejected as stack air" [1] "120 out of 1237 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"