[1] "2025-04-30 00:39:11 MDT" [1] "1510" "151121" "d325" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151121a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85222 63 [1] 85222 [1] 85222 [1] "testing skipping spike filter" [1] 85222 [1] 85222 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:39:15 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.77" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "10 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.77" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "10 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:39:16 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:39:16 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:39:27 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:39:28 MDT" [1] "reading in recalculated plot titles" [1] "Removed 10 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1408 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:39:32 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.4" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 403.3 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.59 minutes" [1] "Shortest Cal: 3 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 12 13 [6,] 14 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 66 75 0.04652254 0.05278241 0.05034783 2 7.236297 373.8540 3 2 76 85 0.05347784 0.05973727 0.05730279 2 -15.551617 475.4274 5 2 366 375 0.25520139 0.26146421 0.25902677 3 -15.537719 491.4160 6 4 376 385 0.26215972 0.26841895 0.26598480 3 7.234578 370.2486 7 3 386 395 0.26911806 0.27537731 0.27433392 3 -6.376203 463.7216 9 4 666 675 0.46398860 0.47024783 0.46781388 2 7.229852 363.9049 10 2 676 685 0.47094329 0.47720286 0.47476846 2 -15.564203 479.0983 12 3 809 817 0.58041045 0.58666950 0.58597420 3 -6.398484 478.6635 13 2 818 827 0.58736490 0.59362474 0.59119044 3 -15.583266 490.2042 14 4 828 837 0.59432014 0.60058290 0.59814823 3 7.192391 363.3587 15 5 838 847 0.60127818 0.60754109 0.60649801 NA -6.405969 443.4487 17 4 1107 1116 0.78894884 0.79520868 0.79277465 2 7.111461 364.4271 18 2 1117 1126 0.79590434 0.80216377 0.79972965 2 -15.676094 493.0467 20 2 1405 1408 0.99763874 0.99972486 0.99937717 1 -15.761844 513.1213 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.165937 1.302118 -0.0001857300 2.8849838 0.003649509 8.638994 3 1.166038 1.302263 -0.0009293526 1.1520807 0.004414545 3.793055 5 1.165226 1.302114 -0.0022427935 -0.7826444 0.005859783 4.242492 6 1.165156 1.302035 0.0025484357 1.1844173 0.007792994 4.555430 7 1.165147 1.302058 0.0004593655 -8.2554347 0.006080905 11.028924 9 1.164097 1.301423 -0.0021984462 1.8212459 0.006083307 7.474341 10 1.163987 1.301318 -0.0011293281 4.1424809 0.005530329 16.899486 12 1.161750 1.298911 -0.0020468711 2.7473226 0.004643628 3.359448 13 1.161705 1.298704 -0.0015897461 1.3216441 0.004149784 6.011519 14 1.161338 1.298351 0.0007299745 -0.5616087 0.004061160 11.327272 15 1.161399 1.298472 0.0061792610 6.4433104 0.004375223 8.511426 17 1.156121 1.293273 0.0001672347 -0.2072405 0.002903188 12.645598 18 1.156091 1.293246 -0.0024723797 -6.0822243 0.006647452 17.868167 20 1.149469 1.286490 -0.0018100866 17.7791830 0.001281631 12.588543 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.41 co2l1 = 0.944 co2l0 = -0.022" [1] "co2l0 = -195.4 co2l1 = 0.214" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 313 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "228 out of 1228 1-min values rejected as stack air" [1] "228 out of 1228 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"