[1] "2017-04-07 14:40:25 MDT"
[1] "1510"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1510/151120.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1510/151121.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1510/151122.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1510/151123.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1510/151124.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1510/151125.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1510/151126.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1510/151127.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1510/151128.html"  
[10] "/net/www/docs/homes/stephens/GO2/1510/151129.html"  
[11] "/net/www/docs/homes/stephens/GO2/1510/151130.html"  
[12] "/net/www/docs/homes/stephens/GO2/1510/151201.html"  
[13] "/net/www/docs/homes/stephens/GO2/1510/151202.html"  
[14] "/net/www/docs/homes/stephens/GO2/1510/151203.html"  
[15] "/net/www/docs/homes/stephens/GO2/1510/151204.html"  
[16] "/net/www/docs/homes/stephens/GO2/1510/151205.html"  
[17] "/net/www/docs/homes/stephens/GO2/1510/151206.html"  
[18] "/net/www/docs/homes/stephens/GO2/1510/151207.html"  
[19] "/net/www/docs/homes/stephens/GO2/1510/151208.html"  
[20] "/net/www/docs/homes/stephens/GO2/1510/151209.html"  
[21] "/net/www/docs/homes/stephens/GO2/1510/151210.html"  
[22] "/net/www/docs/homes/stephens/GO2/1510/151211.html"  
[23] "/net/www/docs/homes/stephens/GO2/1510/151212.html"  
[24] "/net/www/docs/homes/stephens/GO2/1510/151213.html"  
[25] "/net/www/docs/homes/stephens/GO2/1510/151214.html"  
[26] "/net/www/docs/homes/stephens/GO2/1510/151215.html"  
[27] "/net/www/docs/homes/stephens/GO2/1510/151216.html"  
[28] "/net/www/docs/homes/stephens/GO2/1510/151217.html"  
[29] "/net/www/docs/homes/stephens/GO2/1510/151218.html"  
[30] "/net/www/docs/homes/stephens/GO2/1510/151219.html"  
[31] "/net/www/docs/homes/stephens/GO2/1510/151220.html"  
[32] "/net/www/docs/homes/stephens/GO2/1510/151221.html"  
[33] "/net/www/docs/homes/stephens/GO2/1510/151222.html"  
[34] "/net/www/docs/homes/stephens/GO2/1510/151223.html"  
[35] "/net/www/docs/homes/stephens/GO2/1510/151224.html"  
[36] "/net/www/docs/homes/stephens/GO2/1510/151225.html"  
[37] "/net/www/docs/homes/stephens/GO2/1510/151226.html"  
[38] "/net/www/docs/homes/stephens/GO2/1510/151227.html"  
[39] "/net/www/docs/homes/stephens/GO2/1510/lmg_1510.html"
 [1] "/net/www/docs/homes/stephens/GO2/1510/151120.html"
 [2] "/net/www/docs/homes/stephens/GO2/1510/151121.html"
 [3] "/net/www/docs/homes/stephens/GO2/1510/151122.html"
 [4] "/net/www/docs/homes/stephens/GO2/1510/151123.html"
 [5] "/net/www/docs/homes/stephens/GO2/1510/151124.html"
 [6] "/net/www/docs/homes/stephens/GO2/1510/151125.html"
 [7] "/net/www/docs/homes/stephens/GO2/1510/151126.html"
 [8] "/net/www/docs/homes/stephens/GO2/1510/151127.html"
 [9] "/net/www/docs/homes/stephens/GO2/1510/151128.html"
[10] "/net/www/docs/homes/stephens/GO2/1510/151129.html"
[11] "/net/www/docs/homes/stephens/GO2/1510/151130.html"
[12] "/net/www/docs/homes/stephens/GO2/1510/151201.html"
[13] "/net/www/docs/homes/stephens/GO2/1510/151202.html"
[14] "/net/www/docs/homes/stephens/GO2/1510/151203.html"
[15] "/net/www/docs/homes/stephens/GO2/1510/151204.html"
[16] "/net/www/docs/homes/stephens/GO2/1510/151205.html"
[17] "/net/www/docs/homes/stephens/GO2/1510/151206.html"
[18] "/net/www/docs/homes/stephens/GO2/1510/151207.html"
[19] "/net/www/docs/homes/stephens/GO2/1510/151208.html"
[20] "/net/www/docs/homes/stephens/GO2/1510/151209.html"
[21] "/net/www/docs/homes/stephens/GO2/1510/151210.html"
[22] "/net/www/docs/homes/stephens/GO2/1510/151211.html"
[23] "/net/www/docs/homes/stephens/GO2/1510/151212.html"
[24] "/net/www/docs/homes/stephens/GO2/1510/151213.html"
[25] "/net/www/docs/homes/stephens/GO2/1510/151214.html"
[26] "/net/www/docs/homes/stephens/GO2/1510/151215.html"
[27] "/net/www/docs/homes/stephens/GO2/1510/151216.html"
[28] "/net/www/docs/homes/stephens/GO2/1510/151217.html"
[29] "/net/www/docs/homes/stephens/GO2/1510/151218.html"
[30] "/net/www/docs/homes/stephens/GO2/1510/151219.html"
[31] "/net/www/docs/homes/stephens/GO2/1510/151220.html"
[32] "/net/www/docs/homes/stephens/GO2/1510/151221.html"
[33] "/net/www/docs/homes/stephens/GO2/1510/151222.html"
[34] "/net/www/docs/homes/stephens/GO2/1510/151223.html"
[35] "/net/www/docs/homes/stephens/GO2/1510/151224.html"
[36] "/net/www/docs/homes/stephens/GO2/1510/151225.html"
[37] "/net/www/docs/homes/stephens/GO2/1510/151226.html"
[38] "/net/www/docs/homes/stephens/GO2/1510/151227.html"
[1] "151120" "151227"
 [1] "151120" "151121" "151122" "151123" "151124" "151125" "151126" "151127"
 [9] "151128" "151129" "151130" "151201" "151202" "151203" "151204" "151205"
[17] "151206" "151207" "151208" "151209" "151210" "151211" "151212" "151213"
[25] "151214" "151215" "151216" "151217" "151218" "151219" "151220" "151221"
[33] "151222" "151223" "151224" "151225" "151226" "151227"
[1] "000000" "999999"
[1] "151120_mr_proc.txt, 151120_cal_periods.txt, 151120_cal_param.txt,450jogs"
[1] "151121_mr_proc.txt, 151121_cal_periods.txt, 151121_cal_param.txt,1408jogs"
[1] "151122_mr_proc.txt, 151122_cal_periods.txt, 151122_cal_param.txt,1405jogs"
[1] "151123_mr_proc.txt, 151123_cal_periods.txt, 151123_cal_param.txt,1380jogs"
[1] "151124_mr_proc.txt, 151124_cal_periods.txt, 151124_cal_param.txt,1427jogs"
[1] "151125_mr_proc.txt, 151125_cal_periods.txt, 151125_cal_param.txt,1430jogs"
[1] "151126_mr_proc.txt, 151126_cal_periods.txt, 151126_cal_param.txt,1434jogs"
[1] "151127_mr_proc.txt, 151127_cal_periods.txt, 151127_cal_param.txt,1415jogs"
[1] "151128_mr_proc.txt, 151128_cal_periods.txt, 151128_cal_param.txt,448jogs"
[1] "151129_mr_proc.txt, 151129_cal_periods.txt, 151129_cal_param.txt,1393jogs"
[1] "151130_mr_proc.txt, 151130_cal_periods.txt, 151130_cal_param.txt,1407jogs"
[1] "151201_mr_proc.txt, 151201_cal_periods.txt, 151201_cal_param.txt,1356jogs"
[1] "151202_mr_proc.txt, 151202_cal_periods.txt, 151202_cal_param.txt,1427jogs"
[1] "151203_mr_proc.txt, 151203_cal_periods.txt, 151203_cal_param.txt,1236jogs"
[1] "151204_mr_proc.txt, 151204_cal_periods.txt, 151204_cal_param.txt,1393jogs"
[1] "151205_mr_proc.txt, 151205_cal_periods.txt, 151205_cal_param.txt,1403jogs"
[1] "151206_mr_proc.txt, 151206_cal_periods.txt, 151206_cal_param.txt,1404jogs"
[1] "151207_mr_proc.txt, 151207_cal_periods.txt, 151207_cal_param.txt,1423jogs"
[1] "151208_mr_proc.txt, 151208_cal_periods.txt, 151208_cal_param.txt,1433jogs"
[1] "151209_mr_proc.txt, 151209_cal_periods.txt, 151209_cal_param.txt,1436jogs"
[1] "151210_mr_proc.txt, 151210_cal_periods.txt, 151210_cal_param.txt,1196jogs"
[1] "151211_mr_proc.txt, 151211_cal_periods.txt, 151211_cal_param.txt,988jogs"
[1] "151212_mr_proc.txt, 151212_cal_periods.txt, 151212_cal_param.txt,858jogs"
[1] "151213_mr_proc.txt, 151213_cal_periods.txt, 151213_cal_param.txt,1216jogs"
[1] "151214_mr_proc.txt, 151214_cal_periods.txt, 151214_cal_param.txt,1434jogs"
[1] "151215_mr_proc.txt, 151215_cal_periods.txt, 151215_cal_param.txt,1436jogs"
[1] "151216_mr_proc.txt, 151216_cal_periods.txt, 151216_cal_param.txt,1405jogs"
[1] "151217_mr_proc.txt, 151217_cal_periods.txt, 151217_cal_param.txt,1425jogs"
[1] "151218_mr_proc.txt, 151218_cal_periods.txt, 151218_cal_param.txt,1432jogs"
[1] "151219_mr_proc.txt, 151219_cal_periods.txt, 151219_cal_param.txt,1413jogs"
[1] "151220_mr_proc.txt, 151220_cal_periods.txt, 151220_cal_param.txt,1434jogs"
[1] "151221_mr_proc.txt, 151221_cal_periods.txt, 151221_cal_param.txt,1436jogs"
[1] "151222_mr_proc.txt, 151222_cal_periods.txt, 151222_cal_param.txt,1435jogs"
[1] "151223_mr_proc.txt, 151223_cal_periods.txt, 151223_cal_param.txt,1394jogs"
[1] "151224_mr_proc.txt, 151224_cal_periods.txt, 151224_cal_param.txt,1246jogs"
[1] "151225_mr_proc.txt, 151225_cal_periods.txt, 151225_cal_param.txt,734jogs"
[1] "151226_mr_proc.txt, 151226_cal_periods.txt, 151226_cal_param.txt,366jogs"
[1] "151227_mr_proc.txt, 151227_cal_periods.txt, 151227_cal_param.txt,1150jogs"
[1] "151120" "151227" "d324"   "d361"  
[1] "Calculating derived concentration values"
[1] "2017-04-07 14:43:55 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.885, ave o2scale2 = 0.785"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-07 14:44:44 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-07 14:45:50 MDT"
[1] "2017-04-07 14:46:05 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.98 O2 = -657.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.92 O2 = -579.4"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1510 Valve transient for  Line 1 after Line 2 = 0.12 , 0.38 , 0.14 , -0.01 , -0.05 n = 7"
[1] "1510 Valve transient for  Line 1 after Cal = -0.43 , -0.2 , 0.02 , 0.01 , 0.01 n = 149"
[1] "1510 Valve transient for  Line 2 after Line 1 = 9.75 , 7.2 , 2.21 , -0.32 , -0.4 n = 4"
[1] "1510 Valve transient for  Line 2 after Cal = -0.24 , -0.12 , 0.03 , 0.03 , 0.01 n = 3"
[1] "1510 Valve transient for  Line 1 after HS = -0.77 , -0.38 , 0.02 , 0 , -0.01 n = 70"
[1] "1510 Valve transient for  Line 1 after MS = -0.25 , -0.1 , 0.02 , 0.02 , 0.02 n = 73"
[1] "1510 Valve transient for  Line 1 after LS = -0.91 , -0.48 , -0.06 , -0.05 , 0.01 n = 1"
[1] "1510 Valve transient for  Line 1 after LT = -4.42 , -3.29 , -1.2 , -0.18 , 0 n = 5"
[1] "1510 Valve transient for  Line 2 after HS = -0.77 , -0.42 , -0.07 , -0.08 , -0.08 n = 3"
[1] "1510 Valve transient for  Line 2 after MS = -0.19 , -0.08 , 0.02 , 0.01 , 0.01 n = 2"
[1] "1510 Valve transient for  HS after Line 1 = 0.77 , 0.39 , 0.01 , 0 , 0 n = 66"
[1] "1510 Valve transient for  HS after Line 2 = 0.72 , 0.36 , 0.01 , 0.01 , 0 n = 2"
[1] "1510 Valve transient for  HS after MS = 1.41 , 0.71 , 0.01 , 0.01 , 0 n = 5"
[1] "1510 Valve transient for  HS after LS = 3.36 , 1.69 , 0.01 , 0 , 0 n = 71"
[1] "1510 Valve transient for  MS after Line 1 = -0.23 , -0.11 , 0.01 , 0.01 , 0.01 n = 2"
[1] "1510 Valve transient for  MS after LS = 2 , 1 , 0 , 0 , 0 n = 46"
[1] "1510 Valve transient for  MS after LT = 1.27 , 0.64 , 0 , 0 , 0 n = 24"
[1] "1510 Valve transient for  LS after Line 1 = -1.68 , -0.84 , 0 , 0 , 0 n = 62"
[1] "1510 Valve transient for  LS after Line 2 = -1.69 , -0.85 , -0.01 , -0.01 , 0 n = 4"
[1] "1510 Valve transient for  LS after HS = -3.43 , -1.73 , -0.01 , 0 , 0 n = 72"
[1] "1510 Valve transient for  LS after MS = 0 , 0 , NA , NA , NA n = 1"
[1] "1510 Valve transient for  LT after LS = 0.75 , 0.4 , 0.05 , 0.03 , 0.02 n = 27"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "1490 out of 9120 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "7630 out of 41922 1-min values rejected as stack air"
[1] "7391 out of 40193 Line 1 1-min values rejected as stack air"
[1] "239 out of 1729 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1510loxy.d324"
[1] "LMG1510loxy.d325"
[1] "LMG1510loxy.d326"
[1] "LMG1510loxy.d327"
[1] "LMG1510loxy.d329"
[1] "LMG1510loxy.d330"
[1] "LMG1510loxy.d331"
[1] "LMG1510loxy.d332"
[1] "LMG1510loxy.d333"
[1] "LMG1510loxy.d334"
[1] "LMG1510loxy.d335"
[1] "LMG1510loxy.d336"
[1] "LMG1510loxy.d337"
[1] "LMG1510loxy.d338"
[1] "LMG1510loxy.d339"
[1] "LMG1510loxy.d340"
[1] "LMG1510loxy.d341"
[1] "LMG1510loxy.d342"
[1] "LMG1510loxy.d343"
[1] "LMG1510loxy.d344"
[1] "LMG1510loxy.d345"
[1] "LMG1510loxy.d346"
[1] "LMG1510loxy.d347"
[1] "LMG1510loxy.d348"
[1] "LMG1510loxy.d349"
[1] "LMG1510loxy.d350"
[1] "LMG1510loxy.d351"
[1] "LMG1510loxy.d352"
[1] "LMG1510loxy.d353"
[1] "LMG1510loxy.d354"
[1] "LMG1510loxy.d355"
[1] "LMG1510loxy.d356"
[1] "LMG1510loxy.d358"
[1] "LMG1510loxy.d359"
[1] "LMG1510loxy.d360"
[1] "LMG1510loxy.d361"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,] 107.5 0.5859375
 [2,] 112.5 0.7812500
 [3,] 117.5 0.5859375
 [4,] 122.5 0.7812500
 [5,] 127.5 1.7578125
 [6,] 132.5 1.7578125
 [7,] 137.5 0.5859375
 [8,] 142.5 0.5859375
 [9,] 147.5 0.3906250
[10,] 152.5 0.5859375
[11,] 157.5 0.5859375
[12,] 162.5 0.7812500
[13,] 167.5 0.5859375
[14,] 172.5 0.7812500
[15,] 177.5 0.7812500
[16,] 182.5 1.1718750
[17,] 187.5 0.1953125
[18,] 192.5 0.1953125
[19,] 197.5 0.1953125
[20,] 202.5 0.5859375
[21,] 207.5 0.5859375
[22,] 212.5 0.3906250
[23,] 217.5 0.5859375
[24,] 222.5 0.7812500
[25,] 227.5 0.7812500
[26,] 232.5 1.1718750
[27,] 237.5 0.9765625
[28,] 242.5 1.5625000
[29,] 247.5 0.5859375
[30,] 252.5 0.5859375
[31,] 257.5 0.5859375
[32,] 262.5 0.9765625
[33,] 267.5 0.7812500
[34,] 272.5 0.1953125
[35,] 277.5 0.5859375
[36,] 282.5 0.5859375
[37,] 287.5 0.7812500
[38,] 292.5 0.5859375
[39,] 297.5 0.1953125
[40,] 302.5 0.9765625
[41,] 307.5 0.7812500
[42,] 312.5 0.7812500
[43,] 317.5 0.5859375
[44,] 322.5 0.1953125
[45,] 327.5 0.5859375
[46,] 332.5 0.7812500
[47,] 397.5 0.1953125
       [,1]      [,2]
 [1,]  97.5 0.1953125
 [2,] 102.5 0.1953125
 [3,] 107.5 0.1953125
 [4,] 117.5 0.3906250
 [5,] 122.5 0.3906250
 [6,] 132.5 0.3906250
 [7,] 137.5 0.1953125
 [8,] 142.5 0.3906250
 [9,] 152.5 0.1953125
[10,] 157.5 0.3906250
[11,] 172.5 0.1953125
[12,] 177.5 0.1953125
[13,] 182.5 0.1953125
[14,] 192.5 0.3906250
[15,] 202.5 0.1953125
[16,] 207.5 0.3906250
[17,] 212.5 0.1953125
[18,] 222.5 0.1953125
[19,] 227.5 0.3906250
[20,] 237.5 0.3906250
[21,] 242.5 0.1953125
[22,] 257.5 0.7812500
[23,] 267.5 0.1953125
[24,] 272.5 0.1953125
[25,] 277.5 0.1953125
[26,] 287.5 0.1953125
[27,] 292.5 0.7812500
[28,] 297.5 0.1953125
[29,] 302.5 0.7812500
[30,] 307.5 0.5859375
[31,] 312.5 1.3671875
[32,] 317.5 1.5625000
[33,] 322.5 0.9765625
[34,] 327.5 1.5625000
[35,] 332.5 1.3671875
[36,] 337.5 0.9765625
[37,] 342.5 0.7812500
[38,] 347.5 0.5859375
[39,] 357.5 0.1953125
[40,] 367.5 1.7578125
[41,] 372.5 1.5625000
[42,] 377.5 0.1953125
[43,] 392.5 0.3906250
[44,] 402.5 0.1953125
[45,] 412.5 0.3906250
[46,] 417.5 0.1953125
[47,] 422.5 0.1953125
[48,] 427.5 0.3906250
[49,] 432.5 0.1953125
[50,] 437.5 0.1953125
[51,] 447.5 0.7812500
       [,1]      [,2]
 [1,]  92.5 0.1953125
 [2,]  97.5 0.1953125
 [3,] 102.5 0.1953125
 [4,] 107.5 0.1953125
 [5,] 112.5 0.1953125
 [6,] 117.5 0.1953125
 [7,] 127.5 0.1953125
 [8,] 132.5 0.1953125
 [9,] 137.5 0.9765625
[10,] 142.5 0.1953125
[11,] 152.5 0.9765625
[12,] 177.5 0.1953125
[13,] 197.5 0.1953125
[14,] 212.5 0.1953125
[15,] 232.5 0.1953125
[16,] 247.5 0.1953125
[17,] 267.5 0.1953125
[18,] 282.5 0.1953125
[19,] 287.5 0.1953125
[20,] 292.5 0.1953125
[21,] 297.5 0.9765625
[22,] 302.5 2.1484375
[23,] 307.5 0.9765625
[24,] 312.5 0.1953125
[25,] 317.5 0.7812500
[26,] 322.5 2.3437500
[27,] 327.5 2.3437500
[28,] 332.5 1.9531250
[29,] 337.5 0.1953125
[30,] 342.5 0.1953125
[31,] 367.5 0.3906250
[32,] 372.5 0.7812500
[33,] 387.5 0.1953125
[34,] 392.5 0.3906250
[35,] 402.5 0.3906250
[36,] 407.5 0.1953125
[37,] 412.5 0.1953125
[38,] 417.5 0.1953125
[39,] 422.5 0.1953125
[40,] 427.5 0.1953125
[41,] 432.5 0.1953125
[42,] 437.5 0.3906250
[43,] 442.5 0.1953125
[44,] 447.5 0.1953125
       [,1]      [,2]
 [1,]  92.5 0.1953125
 [2,] 102.5 0.1953125
 [3,] 117.5 0.3906250
 [4,] 122.5 0.5859375
 [5,] 127.5 0.5859375
 [6,] 132.5 0.3906250
 [7,] 137.5 0.5859375
 [8,] 142.5 0.9765625
 [9,] 147.5 0.5859375
[10,] 152.5 4.6875000
[11,] 157.5 0.7812500
[12,] 162.5 0.5859375
[13,] 167.5 0.1953125
[14,] 177.5 0.1953125
[15,] 182.5 0.1953125
[16,] 187.5 0.1953125
[17,] 192.5 0.1953125
[18,] 197.5 0.1953125
[19,] 202.5 0.1953125
[20,] 212.5 0.3906250
[21,] 222.5 0.3906250
[22,] 232.5 0.3906250
[23,] 242.5 0.1953125
[24,] 247.5 0.1953125
[25,] 262.5 0.1953125
[26,] 272.5 0.1953125
[27,] 282.5 0.1953125
[28,] 297.5 0.1953125
[29,] 302.5 0.1953125
[30,] 317.5 0.1953125
[31,] 327.5 0.1953125
[32,] 332.5 0.1953125
[33,] 337.5 0.1953125
[34,] 347.5 2.1484375
[35,] 352.5 0.1953125
[36,] 367.5 0.1953125
[37,] 412.5 0.1953125
[38,] 417.5 0.3906250
[39,] 422.5 0.3906250
[40,] 427.5 0.3906250
[41,] 432.5 0.1953125
[42,] 437.5 0.1953125
[43,] 442.5 0.3906250
[44,] 447.5 0.3906250
[1] "making cruise html"
[1] "2017-04-07 14:47:42 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"