[1] "2025-04-30 00:36:40 MDT" [1] "1509" "151111" "d315" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151111a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:36:44 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.78" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "152 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.78" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "152 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:36:44 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:36:44 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:37:02 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:37:03 MDT" [1] "reading in recalculated plot titles" [1] "Removed 152 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1284 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:37:07 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 395.45 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.88 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.07 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [3,] 7 8 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 20 29 0.01460275 0.02086227 0.01842779 2 7.201844 372.1971 3 2 30 39 0.02155790 0.02781713 0.02538288 2 -15.586305 485.4136 5 2 319 327 0.22328837 0.22958912 0.22748349 3 -15.671421 488.5244 6 4 328 337 0.23028626 0.23654783 0.23411372 3 7.134039 373.2863 7 5 338 347 0.23724323 0.24350697 0.24246359 NA -5.882125 444.9420 8 3 348 357 0.24420255 0.25046244 0.24941932 3 -6.482344 474.9880 10 4 579 588 0.43200810 0.43826745 0.43583328 2 7.149352 362.4584 11 2 589 596 0.43896302 0.44383134 0.44209281 2 -15.655104 498.5196 13 2 833 842 0.64069444 0.64695417 0.64451974 3 -15.525047 485.9149 14 4 843 852 0.64764948 0.65390865 0.65147474 3 7.272633 373.3550 15 3 853 861 0.65460422 0.66086374 0.66016836 3 -6.338208 475.4648 17 4 1072 1081 0.84940741 0.85566693 0.85323265 2 7.372203 373.5440 18 2 1082 1091 0.85636238 0.86262211 0.86018754 2 -15.415906 483.3494 19 5 1092 1101 0.86331745 0.86958076 0.86853532 NA -5.445313 444.1737 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.139275 1.280744 5.794743e-04 0.71758005 0.002883915 3.0269023 3 1.138963 1.280409 -1.803049e-03 1.39765821 0.006312760 5.0839592 5 1.133322 1.274092 2.235571e-03 0.46570085 0.005867412 2.7299866 6 1.132980 1.273800 1.716775e-04 2.70412001 0.003795253 7.2293147 7 1.132577 1.273378 -9.534445e-16 -0.59059331 0.000000000 1.7491328 8 1.132298 1.273086 3.075250e-04 -0.78389483 0.002010297 1.1055172 10 1.135018 1.275472 -1.541710e-03 -1.97783782 0.005240844 8.1321542 11 1.135273 1.275739 1.276668e-03 8.19654875 0.004118113 16.2274024 13 1.144997 1.287352 -1.141189e-03 -0.08934663 0.002903344 2.8686397 14 1.145183 1.287586 5.299464e-04 2.51531294 0.007370340 6.5990732 15 1.145696 1.287987 3.474815e-03 0.41366483 0.009712967 0.4142164 17 1.151668 1.294929 -1.487318e-03 0.39730042 0.004868098 7.0694865 18 1.151731 1.295035 -3.180067e-04 0.08846240 0.002698586 4.7299421 19 1.151548 1.294854 2.369767e-03 -0.12652745 0.001679379 1.2263441 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.362 co2l1 = 0.944 co2l0 = -0.022" [1] "co2l0 = -197.16 co2l1 = 0.218" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "44 out of 225 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "181 out of 1096 1-min values rejected as stack air" [1] "181 out of 1096 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"