[1] "2025-04-30 00:36:08 MDT" [1] "1509" "151110" "d314" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151110a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:36:12 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "26 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:36:12 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:36:12 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:36:30 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:36:31 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 687 row(s) with low FLSP" [1] "TEMP: 722 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:36:35 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 395.48 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.02 minutes" [1] "Average Cal: 37.9 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 299.77 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 4 [3,] 5 6 [4,] 8 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 4 1 9 0.1803341 0.1859019 0.1838134 2 7.134357 376.1731 2 2 10 27 0.1865973 0.3947743 0.3036532 2 -15.617461 482.9932 3 4 28 37 0.3954699 0.4017488 0.3993010 2 7.213203 373.8264 4 3 38 46 0.4024496 0.4080424 0.4073435 2 -6.391598 463.7304 6 4 151 160 0.5972051 0.6034650 0.6010306 2 7.257648 370.8285 7 2 161 170 0.6041604 0.6104235 0.6079873 2 -15.520047 487.8369 8 5 171 180 0.6111190 0.6173803 0.6163356 NA -5.716000 439.5702 10 2 447 456 0.8059052 0.8121647 0.8097307 3 -15.500773 483.6965 11 4 457 466 0.8128601 0.8191227 0.8166889 3 7.290805 372.6767 12 3 467 476 0.8198183 0.8260776 0.8250346 3 -6.330453 482.8407 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.130212 1.270238 1.542703e-03 6.54509864 0.0048335193 15.1762489 2 1.134707 1.275007 1.512953e-04 -0.02423039 0.0235988488 8.1194749 3 1.138177 1.278754 1.962739e-03 0.80358024 0.0094130626 5.0486842 4 1.138634 1.279078 2.997774e-03 -0.56597910 0.0070379234 0.5735233 6 1.145055 1.286599 1.963329e-03 2.79776480 0.0057503821 6.9452713 7 1.145197 1.286798 -4.001762e-05 4.82421530 0.0026844355 12.3231488 8 1.145446 1.287079 7.467950e-04 -9.36896242 0.0005303301 12.5680985 10 1.146538 1.288423 3.380621e-04 1.18819805 0.0014966247 4.4736822 11 1.146406 1.288278 1.534510e-03 0.47769894 0.0080405944 3.0487170 12 1.146265 1.288091 1.277808e-03 -0.36086268 0.0069421035 3.7478939 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 399.352 co2l1 = 0.945 co2l0 = -0.015" [1] "co2l0 = -202.88 co2l1 = 0.232" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "0 out of 0 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 576 1-min values rejected as stack air" [1] "0 out of 576 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"