[1] "2025-04-30 00:34:29 MDT" [1] "1509" "151106" "d310" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151106a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:34:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.873, ave o2scale2 = 0.776" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "1 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.873, ave o2scale2 = 0.776" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "1 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:34:33 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:34:33 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:34:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:34:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 1 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1431 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:34:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 399.06 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 11 [5,] 12 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 188 197 0.1318993 0.1381620 0.1357248 2 7.684086 371.0117 3 2 198 207 0.1388577 0.1451168 0.1426826 2 -15.101820 484.3551 5 2 484 493 0.3403852 0.3466443 0.3442101 3 -15.103094 485.2496 6 4 494 503 0.3473400 0.3535991 0.3511649 3 7.666039 370.3782 7 3 504 513 0.3542946 0.3605541 0.3595109 3 -5.948391 475.6384 9 4 784 793 0.5490625 0.5553218 0.5528876 2 7.646141 368.4321 10 2 794 803 0.5560174 0.5622767 0.5598428 2 -15.140031 482.5373 11 5 804 813 0.5629724 0.5692315 0.5681884 NA -5.320813 444.4190 13 2 1084 1093 0.7577471 0.7640061 0.7615721 3 -15.138352 490.4363 14 4 1094 1103 0.7647016 0.7709614 0.7685272 3 7.642453 367.1303 15 3 1104 1113 0.7716568 0.7779201 0.7768767 3 -5.966133 477.0312 17 4 1384 1393 0.9664353 0.9727004 0.9702649 2 7.665906 371.2248 18 2 1394 1403 0.9733982 0.9796573 0.9772232 2 -15.114320 484.6963 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.143848 1.287024 0.0014081030 0.50711279 0.0050458763 3.6569553 3 1.144107 1.287265 0.0015596009 0.90423258 0.0060213939 3.6003025 5 1.145363 1.288708 -0.0024114415 1.98287113 0.0062998902 6.5844059 6 1.145229 1.288546 0.0022071865 0.89446017 0.0057175850 3.8658418 7 1.145258 1.288591 -0.0003803814 1.34805357 0.0030931863 1.8675262 9 1.144119 1.287384 0.0017341899 0.13011881 0.0044716056 2.8452558 10 1.144249 1.287528 -0.0022959430 2.11481233 0.0074676385 7.0356154 11 1.144248 1.287499 -0.0008737622 -0.04221673 0.0006187184 1.0119242 13 1.146112 1.289676 -0.0004523232 1.63563651 0.0053501228 4.7542116 14 1.146190 1.289745 0.0029507574 0.41742565 0.0085771674 2.5673120 15 1.146507 1.290062 0.0008641829 -0.30970496 0.0041618266 0.7429803 17 1.148829 1.292680 0.0003607440 1.20555810 0.0042755273 3.1888282 18 1.148995 1.292873 -0.0026412375 -0.37831471 0.0068767398 1.7898020 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.948 co2l1 = 0.944 co2l0 = -0.017" [1] "co2l0 = -197.43 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "5 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1249 1-min values rejected as stack air" [1] "0 out of 1249 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "making html"