[1] "2025-04-30 00:33:59 MDT" [1] "1509" "151105" "d309" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151105a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:34:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.771" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "66 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.868, ave o2scale2 = 0.771" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "68 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:34:04 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:34:04 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:34:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:34:22 MDT" [1] "reading in recalculated plot titles" [1] "Removed 68 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1364 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:34:24 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 407.94 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.4 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 3 [3,] 4 6 [4,] 7 8 [5,] 9 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 101 105 0.08887679 0.09165856 0.09096305 1 -14.873646 471.7437 4 4 357 365 0.29693993 0.30250460 0.30041784 2 7.865920 370.4339 5 2 366 374 0.30319997 0.30876366 0.30667715 2 -14.909598 473.5753 10 2 656 665 0.50562040 0.51187963 0.50944550 3 -14.970609 484.6065 11 4 666 675 0.51257523 0.51883545 0.51640083 3 7.790297 368.9284 12 3 676 685 0.51953119 0.52579051 0.52474715 3 -5.810867 478.1420 14 4 956 965 0.71429274 0.72055217 0.71811769 2 7.763641 367.5909 15 2 966 975 0.72124774 0.72750703 0.72507305 2 -15.011836 483.0309 17 2 1254 1263 0.92317595 0.92943519 0.92700091 3 -15.054461 483.1835 18 4 1264 1273 0.93013079 0.93638979 0.93395565 3 7.713641 370.2042 19 5 1274 1283 0.93708657 0.94334789 0.94230480 NA -5.206625 447.9300 20 3 1284 1293 0.94404363 0.95030677 0.94926356 3 -5.904039 474.9710 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.156587 1.314473 -0.0001872296 -4.0246517 0.0004066504 12.7994818 4 1.153679 1.299019 0.0022039701 -0.7448165 0.0059507215 6.9010849 5 1.153702 1.299244 -0.0036751435 0.5613263 0.0080868380 14.7255344 10 1.151193 1.297638 -0.0018574272 1.5080367 0.0054704717 8.5165505 11 1.150904 1.297267 0.0019593418 1.3385885 0.0076501889 9.5951431 12 1.150834 1.297064 0.0003247483 6.6870326 0.0025912881 9.4418201 14 1.149970 1.294056 0.0009539320 1.7584244 0.0041868670 5.2389022 15 1.150031 1.294131 -0.0001463963 1.7234530 0.0033209860 6.4740534 17 1.147436 1.291059 -0.0002295613 0.6550338 0.0023135706 2.8927049 18 1.147288 1.290869 0.0026731997 0.8744206 0.0068310078 2.9462695 19 1.146877 1.290406 -0.0047440699 0.1411557 0.0033587572 0.9304657 20 1.146673 1.290163 -0.0002295814 2.0510358 0.0025773605 2.8607552 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.808 co2l1 = 0.945 co2l0 = -0.016" [1] "co2l0 = -201.23 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "64 out of 190 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "126 out of 1186 1-min values rejected as stack air" [1] "86 out of 1128 Line 1 1-min values rejected as stack air" [1] "40 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"