[1] "2025-04-30 00:33:29 MDT" [1] "1509" "151104" "d308" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151104a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:33:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.778" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "14 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.778" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "14 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:33:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:33:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:33:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:33:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 14 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1422 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:33:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 398.8 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 61 70 0.04521270 0.05147147 0.04903749 2 7.682391 372.6264 3 2 71 80 0.05216678 0.05842685 0.05599240 2 -15.115734 485.8473 4 5 81 90 0.05912214 0.06538108 0.06433803 NA -5.250312 444.6074 6 2 360 369 0.25407526 0.26033857 0.25790399 3 -15.126273 488.9935 7 4 370 379 0.26103397 0.26729398 0.26485946 3 7.665938 372.4756 8 3 380 389 0.26798944 0.27424887 0.27320584 3 -5.931375 477.4613 12 4 659 668 0.46279080 0.46905428 0.46661707 2 7.766227 371.1124 13 2 669 678 0.46974977 0.47600935 0.47357477 2 -15.015391 483.2573 15 2 952 961 0.67147222 0.67773157 0.67529717 3 -14.962156 485.9267 16 4 962 971 0.67842697 0.68468634 0.68225239 3 7.816992 366.0800 17 5 972 981 0.68538197 0.69164187 0.69059855 NA -5.144969 446.3623 18 3 982 991 0.69233695 0.69859624 0.69755318 3 -5.769945 473.8101 20 4 1251 1260 0.88016238 0.88642185 0.88398750 2 7.896297 371.3286 21 2 1261 1270 0.88711727 0.89337616 0.89094229 2 -14.869555 489.4127 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.133051 1.272540 -0.0013298821 0.83588269 0.0044614857 2.1224002 3 1.132807 1.272256 0.0009612501 1.57060106 0.0036662904 5.8570823 4 1.132571 1.271993 -0.0003744695 -0.11512244 0.0002651650 0.7602051 6 1.135773 1.275628 -0.0006501378 -0.73402822 0.0029468767 3.8748558 7 1.136104 1.275988 0.0045565815 -0.54442961 0.0120071593 3.4218482 8 1.136776 1.276748 0.0014976085 0.76236017 0.0040083618 2.0545701 12 1.143734 1.284904 -0.0003089129 1.72651366 0.0034001933 4.4841014 13 1.144121 1.285359 -0.0015168737 2.52316512 0.0043011302 7.0283038 15 1.149837 1.292146 0.0001010931 0.08092255 0.0026205319 3.9140161 16 1.149847 1.292149 0.0022358156 -0.03109566 0.0074910242 2.4395527 17 1.149993 1.292342 -0.0013100437 -0.16272580 0.0009280777 0.7093908 18 1.150369 1.292787 0.0004837907 2.89560225 0.0051315765 4.2750729 20 1.155283 1.298768 0.0008528804 0.71525625 0.0057448298 3.7836893 21 1.155455 1.298951 -0.0009443629 -1.44388507 0.0027135238 5.9218019 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.847 co2l1 = 0.944 co2l0 = -0.029" [1] "co2l0 = -197.59 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "89 out of 496 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "407 out of 1226 1-min values rejected as stack air" [1] "386 out of 1168 Line 1 1-min values rejected as stack air" [1] "21 out of 58 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"