[1] "2025-04-30 00:32:59 MDT" [1] "1509" "151103" "d307" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151103a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:33:03 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "25 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.879, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "24 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:33:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:33:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:33:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:33:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 24 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1412 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:33:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 394.92 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.8 minutes" [1] "Shortest Cal: 7.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 10 0.001611227 0.007871499 0.005436932 3 -14.958273 488.4411 2 4 11 20 0.008566869 0.014826389 0.012391858 3 7.842453 375.2057 3 3 21 30 0.015521904 0.021781047 0.020737789 3 -5.780508 478.0576 6 4 295 304 0.210280093 0.216541088 0.214106094 2 7.891094 380.7084 7 2 305 314 0.217236545 0.223496528 0.221061972 2 -14.902828 480.3853 9 2 583 590 0.419699769 0.425263657 0.423061179 3 -14.884608 488.1178 10 4 591 600 0.425959057 0.432221036 0.429784682 3 7.892078 371.2870 11 5 601 610 0.432917824 0.439177141 0.438133709 NA -5.044313 443.5687 12 3 611 620 0.439872541 0.446132118 0.445089113 3 -5.735352 471.7078 14 4 880 889 0.627787037 0.634046296 0.631612229 2 7.883836 373.9964 15 2 890 897 0.636132957 0.641004688 0.639264718 2 -14.896760 487.8832 17 2 1178 1187 0.836535446 0.842794416 0.840360373 3 -14.993437 487.8628 18 4 1188 1197 0.843489757 0.849750000 0.847315571 3 7.780688 374.5005 19 3 1198 1207 0.850445110 0.856704861 0.855661335 3 -5.828188 474.2275 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.135073 1.274454 0.0003840424 2.1414727 0.001468774 7.9705749 2 1.135198 1.274616 0.0025613116 0.9869077 0.006988251 2.4813723 3 1.135555 1.275013 0.0012503511 -4.4394359 0.003297124 6.8310144 6 1.138879 1.279071 -0.0011007445 1.7650019 0.004390407 16.5473448 7 1.138986 1.279154 -0.0012717491 -1.6931519 0.003696154 18.9722817 9 1.139821 1.280247 -0.0028838188 0.6140511 0.006770274 1.8378686 10 1.139690 1.280094 0.0018256168 1.5386988 0.005788569 3.9899148 11 1.139822 1.280255 -0.0068635607 -3.0679579 0.004861359 4.2883663 12 1.139802 1.280268 -0.0005282616 1.1298537 0.002217508 1.8986951 14 1.139361 1.279811 -0.0004435308 0.2006850 0.004906598 2.1186979 15 1.139642 1.280131 0.0001617328 -0.4349397 0.001703588 1.7861410 17 1.137436 1.277635 -0.0016552036 2.3813601 0.005351277 5.8808796 18 1.137169 1.277338 0.0022540791 -0.1387185 0.007021571 3.6287073 19 1.137215 1.277375 -0.0001931186 0.1616645 0.003201213 0.6388124 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.762 co2l1 = 0.944 co2l0 = -0.014" [1] "co2l0 = -202.51 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "86 out of 480 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "394 out of 1234 1-min values rejected as stack air" [1] "340 out of 1175 Line 1 1-min values rejected as stack air" [1] "54 out of 59 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"