[1] "2025-04-30 00:32:29 MDT" [1] "1509" "151102" "d306" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151102a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:32:33 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.796" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "118 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.893, ave o2scale2 = 0.796" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "117 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:32:34 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:32:34 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:32:50 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:32:52 MDT" [1] "reading in recalculated plot titles" [1] "Removed 117 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1319 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:32:54 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 394.81 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.93 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 5 [3,] 6 7 [4,] 8 9 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 231 239 0.1667728 0.1730323 0.1705482 3 -15.180359 483.1710 3 4 240 249 0.1737277 0.1799867 0.1775526 3 7.632406 371.9633 4 5 250 259 0.1806823 0.1869426 0.1858989 NA -5.341781 448.6181 5 3 260 269 0.1876412 0.1939039 0.1928594 3 -6.019492 455.9797 7 4 491 500 0.3755220 0.3817849 0.3793492 1 7.668664 369.8007 10 2 745 754 0.5842304 0.5904903 0.5880561 2 -15.075680 491.3189 12 3 764 772 0.5988395 0.6044039 0.6037084 2 -5.897616 475.6545 14 4 1040 1049 0.7929351 0.7991944 0.7967600 2 7.786289 370.8279 15 2 1050 1059 0.7998899 0.8061487 0.8037147 2 -15.012570 483.0633 16 5 1060 1069 0.8068446 0.8131036 0.8120605 NA -5.302250 445.8983 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.111412 1.245288 -3.030734e-03 0.6455308 0.0081251416 3.580039 3 1.111368 1.245144 7.134766e-05 -1.6483315 0.0065920677 5.773155 4 1.111402 1.245199 2.556428e-03 0.3471606 0.0018119611 2.652317 5 1.111498 1.245308 -2.307929e-04 6.2568335 0.0034332665 13.089738 7 1.115541 1.250288 -6.972653e-04 1.4998376 0.0025699885 4.430746 10 1.122152 1.258917 -2.354920e-04 1.8932575 0.0014525368 16.429012 12 1.122510 1.259635 7.311570e-04 4.4989902 0.0028452786 4.506256 14 1.127626 1.265598 -2.933651e-04 0.7227339 0.0056283658 3.990114 15 1.128048 1.266075 -2.684257e-03 1.4526380 0.0071743620 5.394997 16 1.128437 1.266541 -1.248284e-03 2.1163903 0.0008838835 3.625987 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.909 co2l1 = 0.942 co2l0 = -0.005" [1] "co2l0 = -189.37 co2l1 = 0.204" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "83 out of 445 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "362 out of 1156 1-min values rejected as stack air" [1] "362 out of 1156 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"