[1] "2025-04-30 00:31:58 MDT" [1] "1509" "151101" "d305" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151101a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:32:02 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "164 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.884, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "164 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:32:03 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:32:03 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:32:20 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:32:21 MDT" [1] "reading in recalculated plot titles" [1] "Removed 164 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1272 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:32:25 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 393.03 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 7.78 minutes" [1] "Shortest Cal: 2 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 9 9 [5,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 176 185 0.1233636 0.1296232 0.1271890 2 8.150336 375.1141 3 2 186 195 0.1303185 0.1365815 0.1341458 2 -14.641445 479.4683 5 2 473 482 0.3320677 0.3383275 0.3358932 3 -14.651211 486.1498 6 4 483 492 0.3390229 0.3452860 0.3428502 3 8.126375 373.6002 7 3 493 502 0.3459815 0.3522411 0.3511975 3 -5.496359 476.5023 9 4 766 775 0.5407500 0.5470135 0.5445792 2 8.046203 369.6431 10 2 776 785 0.5477090 0.5539687 0.5515342 2 -14.757086 484.3174 11 5 786 795 0.5546642 0.5609271 0.5598819 NA -4.985437 443.7677 14 4 1023 1030 0.7563923 0.7612604 0.7595218 1 7.855573 326.2313 17 4 1214 1222 0.9581053 0.9643653 0.9621794 2 7.726612 374.8563 18 2 1223 1232 0.9650606 0.9713235 0.9688876 2 -15.112188 485.2966 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.141562 1.282400 0.0018357190 0.3229658 0.005144338 7.570023 3 1.141566 1.282414 -0.0015844452 4.2378640 0.005032643 12.694245 5 1.140844 1.281582 -0.0002533251 2.2647039 0.001791578 6.855873 6 1.140562 1.281267 0.0034619699 1.7917616 0.009599514 4.630046 7 1.140305 1.280977 0.0013357919 -0.4207372 0.005946727 1.103150 9 1.132499 1.271789 0.0011855853 2.1309074 0.004957943 6.214917 10 1.132255 1.271487 -0.0030047381 2.3174346 0.007674600 6.330131 11 1.131726 1.270886 -0.0053665030 -1.4853656 0.003800699 4.460899 14 1.120290 1.257222 0.0025695606 5.3741341 0.006897850 24.120403 17 1.114668 1.249624 -0.0004756951 -0.4407932 0.001503642 5.501404 18 1.114659 1.249634 -0.0022857272 0.2706551 0.006377276 2.889743 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.656 co2l1 = 0.943 co2l0 = -0.013" [1] "co2l0 = -201.56 co2l1 = 0.229" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "56 out of 547 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "491 out of 1107 1-min values rejected as stack air" [1] "491 out of 1107 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"