[1] "2025-04-30 00:31:43 MDT" [1] "1509" "151031" "d304" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151031a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 48328 63 [1] 48328 [1] 48328 [1] "testing skipping spike filter" [1] 48328 [1] 48328 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:31:46 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.787" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "13 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.883, ave o2scale2 = 0.787" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "13 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:31:46 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:31:46 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:31:52 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:31:53 MDT" [1] "reading in recalculated plot titles" [1] "Removed 13 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "Removed 1 row(s) with low FLWTA" [1] "TEMP: 788 0 TRUE" [1] "Removed 667 row(s) with -999.99 for a Licor jog SD" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:31:55 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.4" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 391.22 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.51 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 3 5 13 0.9146663 0.9209253 0.9202300 2 -5.455491 471.1834 1.139631 4 4 22 31 0.9285753 0.9348349 0.9324007 2 8.154734 377.6470 1.140062 5 5 32 41 0.9355302 0.9417945 0.9407515 NA -4.755563 451.2938 1.140171 jfcv2 co2slp o2slp co2sd o2sd 2 1.280047 0.0004546877 5.549446 0.0014530090 5.725082 4 1.279978 0.0025348081 -2.417060 0.0069059975 9.518587 5 1.280270 0.0013732262 -7.493132 0.0009722718 10.635981 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.466 co2l1 = 0.946 co2l0 = 0" [1] "co2l0 = -209.03 co2l1 = 0.245" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "1 out of 47 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "46 out of 62 1-min values rejected as stack air" [1] "46 out of 62 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"