[1] "2025-04-30 00:30:53 MDT" [1] "1509" "151029" "d302" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151029a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:30:57 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 0.782" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "88 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.878, ave o2scale2 = 0.782" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "88 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:30:58 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:30:58 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:31:15 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:31:17 MDT" [1] "reading in recalculated plot titles" [1] "Removed 88 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1347 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:31:19 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 394.23 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 7.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 8 [4,] 9 10 [5,] 11 13 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 140 147 0.1173287 0.1221974 0.1204588 3 -14.300042 484.7507 3 4 148 157 0.1242836 0.1305432 0.1281090 3 8.502984 374.4289 4 3 158 166 0.1312386 0.1374977 0.1368022 3 -5.124570 474.3962 6 4 389 398 0.3260539 0.3323141 0.3298790 2 8.534156 366.8731 7 2 399 408 0.3330127 0.3392745 0.3368379 2 -14.255969 481.5172 9 2 681 690 0.5347905 0.5410533 0.5386187 3 -14.213094 486.2665 10 4 691 700 0.5417488 0.5480085 0.5455744 3 8.586906 370.8013 12 3 711 720 0.5556593 0.5619189 0.5608754 3 -5.035125 478.0375 14 4 980 989 0.7434688 0.7497315 0.7472975 2 8.517320 355.2804 15 2 990 999 0.7504271 0.7566865 0.7542525 2 -14.284328 483.1983 18 2 1280 1289 0.9521753 0.9584349 0.9560007 3 -14.400813 478.9445 19 4 1290 1299 0.9591309 0.9653950 0.9629592 3 8.400078 369.0470 20 3 1300 1309 0.9660926 0.9723516 0.9713084 3 -5.239648 471.5090 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.137870 1.276930 0.0008273127 2.07714905 0.001682013 6.731337 3 1.138679 1.277782 0.0006432944 1.61497092 0.003370822 6.033795 4 1.138811 1.277705 0.0003687430 -0.68057866 0.001467515 1.222184 6 1.143243 1.282448 0.0013653368 -0.79303994 0.003677726 4.747992 7 1.143469 1.282696 -0.0016606663 0.26243503 0.005709876 3.915210 9 1.142961 1.282182 0.0010677251 0.01462652 0.004234873 2.927084 10 1.142662 1.281843 0.0020977778 -3.62079042 0.006408525 16.217124 12 1.142503 1.281604 -0.0001203386 -0.50253180 0.003385730 3.295462 14 1.138776 1.277664 0.0005580460 -7.54376380 0.004115579 23.204403 15 1.138614 1.277502 -0.0026717075 0.93420807 0.006928827 2.925442 18 1.134402 1.272878 -0.0003521674 6.27133506 0.001176405 16.142530 19 1.134356 1.272755 0.0030466976 -1.10015079 0.007842176 3.356680 20 1.134393 1.272760 -0.0005727933 -6.60344301 0.001748704 8.741345 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.153 co2l1 = 0.944 co2l0 = -0.017" [1] "co2l0 = -196.87 co2l1 = 0.219" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "61 out of 135 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "74 out of 1166 1-min values rejected as stack air" [1] "73 out of 899 Line 1 1-min values rejected as stack air" [1] "1 out of 267 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"