[1] "2025-04-30 00:30:21 MDT" [1] "1509" "151028" "d301" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151028a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:30:25 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.781" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "31 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.877, ave o2scale2 = 0.781" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "31 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:30:26 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:30:26 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:30:44 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:30:45 MDT" [1] "reading in recalculated plot titles" [1] "Removed 31 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1405 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:30:49 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 394.09 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.87 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 1 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 102 111 0.07383918 0.08010200 0.07766808 2 8.625844 368.2108 3 2 112 119 0.08149673 0.08706024 0.08520590 2 -14.180535 473.3635 5 2 387 395 0.28257263 0.28883194 0.28654671 3 -14.189369 494.4818 6 4 396 405 0.28952778 0.29578709 0.29335284 3 8.617008 362.1603 8 3 415 424 0.30343750 0.30969725 0.30865420 3 -5.005328 476.1629 10 4 685 694 0.49127477 0.49753472 0.49510016 2 8.636961 375.0057 11 2 695 704 0.49823032 0.50449407 0.50205800 2 -14.168313 496.5172 13 2 982 991 0.69995156 0.70621476 0.70378061 3 -14.211336 482.4086 14 4 992 1001 0.70691016 0.71317355 0.71073770 3 8.582070 367.5762 15 3 1002 1011 0.71386889 0.72013189 0.71908853 3 -5.034273 469.9034 17 4 1279 1288 0.90864633 0.91490625 0.91247170 2 8.492766 366.9445 18 2 1289 1298 0.91560165 0.92186059 0.91942645 2 -14.320445 483.7270 19 5 1299 1308 0.92255590 0.92881591 0.92777257 NA -4.515188 443.7273 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.141190 1.280906 -0.0022274070 1.62397805 0.005988736 4.3050642 3 1.141213 1.280766 0.0006439160 -2.38644351 0.004549700 16.3833830 5 1.139776 1.279423 0.0023453243 4.57604334 0.006202117 16.5500848 6 1.139881 1.279583 0.0011731045 -0.04012476 0.004451554 4.4106405 8 1.139990 1.279738 0.0015972473 -12.31553120 0.003992424 17.1576499 10 1.141947 1.281457 -0.0007717887 4.83626100 0.004396115 21.3014957 11 1.141910 1.281415 -0.0020436995 4.94623052 0.005771892 13.8754945 13 1.141611 1.280884 -0.0025281233 2.18945629 0.006332926 7.9580257 14 1.141444 1.280690 0.0011945866 2.65907293 0.006156754 7.4090345 15 1.141717 1.280970 0.0004962883 -3.86512034 0.001746788 5.3675821 17 1.138848 1.277971 -0.0012955433 2.04894417 0.006786504 6.4847177 18 1.138728 1.277957 -0.0016752881 2.95756200 0.004840242 13.1640279 19 1.138490 1.277800 -0.0018720359 0.54707851 0.001325825 0.8572485 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 398.078 co2l1 = 0.943 co2l0 = -0.023" [1] "co2l0 = -196.17 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "85 out of 425 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "340 out of 1217 1-min values rejected as stack air" [1] "340 out of 1217 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"