[1] "2025-04-30 00:29:50 MDT" [1] "1509" "151027" "d300" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151027a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86220 63 [1] 86220 [1] 86220 [1] "testing skipping spike filter" [1] 86220 [1] 86220 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:29:54 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.779" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "24 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.779" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with SP SD > 1000" [1] "26 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:29:54 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:29:54 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:30:11 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:30:13 MDT" [1] "reading in recalculated plot titles" [1] "Removed 26 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1410 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:30:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.944 co2off = 397.96 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 4 [2,] 5 6 [3,] 7 9 [4,] 10 11 [5,] 13 15 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 41 50 0.02999653 0.03625929 0.03382491 3 -14.055461 491.1396 3 4 51 60 0.03695486 0.04322222 0.04078130 3 8.720742 367.7806 4 5 61 70 0.04391785 0.05018021 0.04913451 NA -4.274094 442.7655 5 3 71 80 0.05087616 0.05713542 0.05609208 3 -4.869281 471.3016 8 4 341 350 0.23889117 0.24516085 0.24272229 2 8.727547 367.2186 9 2 351 360 0.24585773 0.25212648 0.24968866 2 -14.069648 482.5040 11 2 640 649 0.44772234 0.45398255 0.45154805 3 -14.117367 490.5309 12 4 650 659 0.45467792 0.46093753 0.45850319 3 8.663383 371.2589 13 3 660 669 0.46163660 0.46789630 0.46685320 3 -4.946383 466.8183 15 4 918 927 0.65642251 0.66268232 0.66024812 2 8.629828 358.5928 16 2 928 937 0.66337772 0.66963773 0.66720302 2 -14.173695 486.5773 17 5 938 947 0.67033333 0.67659265 0.67554926 NA -4.386625 469.2888 19 2 1218 1227 0.86511464 0.87137419 0.86894024 3 -14.141156 482.7924 20 4 1228 1237 0.87206968 0.87832957 0.87589516 3 8.661672 368.7263 21 3 1238 1247 0.87902451 0.88528744 0.88424447 3 -4.955313 461.6239 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.151405 1.292120 -1.331600e-03 3.1126356 0.003614198 7.755775 3 1.151256 1.291957 1.721496e-03 3.0909904 0.006599465 8.750174 4 1.151179 1.291892 -5.280159e-03 -1.0677094 0.003756505 1.463541 5 1.151299 1.292013 -5.662276e-04 1.9573546 0.005254675 2.570875 8 1.147167 1.287850 2.350862e-03 1.1338756 0.008624596 11.427300 9 1.147106 1.287802 -1.758593e-03 2.8268555 0.005467021 9.578473 11 1.142900 1.283191 -2.493845e-03 1.1909827 0.006199568 10.153816 12 1.142579 1.282827 1.840228e-03 -1.3566035 0.005336180 5.819096 13 1.142321 1.282606 -6.603704e-05 2.7832749 0.004760847 5.386005 15 1.140071 1.280150 -3.773730e-04 -0.3804674 0.001582814 7.476442 16 1.140026 1.280088 -3.929887e-04 1.5738070 0.002079190 5.030322 17 1.140058 1.280214 -5.241483e-03 11.9287923 0.003712311 23.355488 19 1.142251 1.282167 -1.303076e-03 1.3143994 0.003609264 5.328928 20 1.142264 1.282152 2.597173e-03 0.2814535 0.010265871 2.266722 21 1.142410 1.282305 1.214725e-04 7.4278972 0.002890100 14.252729 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.985 co2l1 = 0.944 co2l0 = -0.026" [1] "co2l0 = -195.52 co2l1 = 0.216" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "50 out of 292 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "242 out of 1197 1-min values rejected as stack air" [1] "241 out of 1130 Line 1 1-min values rejected as stack air" [1] "1 out of 67 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"