[1] "2025-04-30 00:29:19 MDT" [1] "1509" "151026" "d299" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151026a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86280 63 [1] 86280 [1] 86280 [1] "testing skipping spike filter" [1] 86280 [1] 86280 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:29:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.767" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "46 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.861, ave o2scale2 = 0.767" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "46 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:29:24 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:29:24 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:29:41 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:29:42 MDT" [1] "reading in recalculated plot titles" [1] "Removed 46 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1390 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:29:45 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.945 co2off = 394.31 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 7 9 [4,] 10 11 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 278 287 0.1952602 0.2015230 0.1990876 3 -14.056188 485.0138 3 4 288 297 0.2022185 0.2084780 0.2060434 3 8.705320 363.8837 4 3 298 307 0.2091736 0.2154338 0.2143904 3 -4.883688 467.4787 6 4 535 544 0.4039652 0.4102245 0.4077901 2 8.705477 367.1391 7 2 545 553 0.4109197 0.4171795 0.4150929 2 -14.085064 489.6466 8 5 554 563 0.4178749 0.4241348 0.4230917 NA -4.188094 448.7994 10 2 834 843 0.6126343 0.6188936 0.6164596 3 -14.011328 487.5582 11 4 844 853 0.6195892 0.6258493 0.6234150 3 8.751969 366.8738 12 3 854 863 0.6265448 0.6328044 0.6317612 3 -4.829836 473.5737 14 4 1134 1143 0.8213229 0.8275821 0.8251477 2 8.771891 362.4562 15 2 1144 1153 0.8282775 0.8345363 0.8321023 2 -13.996445 482.7907 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.167040 1.308425 -0.0026754658 1.5084228 0.0068959098 5.069546 3 1.166981 1.308432 0.0032588805 1.9465472 0.0084627887 5.738364 4 1.167016 1.308459 0.0016178762 -11.7015973 0.0047788130 16.019805 6 1.162574 1.304611 -0.0007823703 3.1739656 0.0043386162 9.209343 7 1.162337 1.304210 -0.0028383472 4.6155319 0.0067146986 12.774483 8 1.162286 1.304221 0.0001872503 4.7149397 0.0001325825 6.172906 10 1.159766 1.301350 -0.0005572924 2.4380827 0.0025629899 7.214301 11 1.159770 1.301348 0.0003863455 0.1224365 0.0054546630 3.661835 12 1.159766 1.301284 -0.0001106536 -0.6021934 0.0016562711 1.105378 14 1.156000 1.296905 0.0010622944 0.6901388 0.0030464686 5.084813 15 1.155916 1.296833 0.0004791544 3.7748778 0.0051196005 11.298725 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.928 co2l1 = 0.945 co2l0 = -0.03" [1] "co2l0 = -193.35 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "48 out of 169 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "121 out of 1234 1-min values rejected as stack air" [1] "121 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"