[1] "2025-04-30 00:28:47 MDT" [1] "1509" "151025" "d298" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151025a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:28:51 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.76" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "15 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.852, ave o2scale2 = 0.76" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "15 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:28:52 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:28:52 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:29:09 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:29:11 MDT" [1] "reading in recalculated plot titles" [1] "Removed 15 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1420 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:29:15 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.946 co2off = 394.38 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.94 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 4 6 [3,] 7 8 [4,] 9 12 [5,] 13 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 215 224 0.1513668 0.1576256 0.1551915 2 8.814016 368.2000 3 2 225 234 0.1583212 0.1645799 0.1621461 2 -13.938617 487.8885 4 5 235 244 0.1652755 0.1715349 0.1704917 NA -4.016687 441.8599 6 2 509 518 0.3603816 0.3666447 0.3642079 3 -13.962203 488.5078 7 4 519 528 0.3673403 0.3735996 0.3711653 3 8.793672 371.7041 8 3 529 538 0.3742951 0.3805660 0.3795219 3 -4.801570 470.7463 10 4 804 813 0.5691516 0.5754146 0.5729797 2 8.785398 365.8281 11 2 814 823 0.5761100 0.5823701 0.5799357 2 -13.982914 491.7866 13 2 1103 1112 0.7778564 0.7841153 0.7816812 3 -14.001664 487.2409 14 4 1113 1122 0.7848108 0.7910703 0.7886359 3 8.744344 370.1218 15 5 1123 1132 0.7917652 0.7980250 0.7969819 NA -4.096281 448.7807 16 3 1133 1142 0.7987203 0.8049799 0.8039368 3 -4.859688 479.3527 18 4 1402 1411 0.9865681 0.9928270 0.9903929 2 8.723406 369.3081 19 2 1412 1420 0.9935227 0.9990862 0.9969999 2 -14.035643 477.3272 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.176557 1.318245 -0.0013774568 -0.87580423 0.005216919 7.054116 3 1.176845 1.318556 -0.0014155173 0.57648878 0.005017874 3.539027 4 1.177032 1.318755 0.0038685524 -2.35034712 0.002740039 3.097382 6 1.176297 1.317975 0.0004191288 -1.08437280 0.004277322 4.947626 7 1.176173 1.317825 0.0010190710 0.46526929 0.008264716 3.598768 8 1.176071 1.317747 -0.0008069092 2.56826605 0.003581082 3.734681 10 1.174794 1.316170 -0.0010579630 0.04963367 0.003465058 2.691455 11 1.174790 1.316169 -0.0016513261 1.02411535 0.005563748 5.939334 13 1.172085 1.313436 -0.0009309205 1.87151870 0.002575628 5.132230 14 1.171881 1.313228 0.0026254834 -1.51792728 0.007371064 7.915495 15 1.171895 1.313223 0.0015604844 -1.76782407 0.001104854 4.165885 16 1.171597 1.312876 -0.0011588771 3.60257442 0.003680153 4.820168 18 1.169802 1.310957 0.0020489955 0.23686267 0.005177540 8.162870 19 1.169891 1.311141 -0.0016782646 4.75618133 0.004681067 12.076620 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.89 co2l1 = 0.945 co2l0 = -0.017" [1] "co2l0 = -196.44 co2l1 = 0.217" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "1 out of 5 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "4 out of 1234 1-min values rejected as stack air" [1] "4 out of 1234 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"