[1] "2025-04-30 00:28:12 MDT" [1] "1509" "151024" "d297" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151024a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85860 63 [1] 85860 [1] 85860 [1] "testing skipping spike filter" [1] 85860 [1] 85860 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:28:16 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.754" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "16 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.845, ave o2scale2 = 0.754" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "21 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:28:17 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:28:17 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:28:35 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:28:37 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1407 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:28:42 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.947 co2off = 397.79 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.02 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 11 [5,] 12 14 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 151 160 0.1076751 0.1139479 0.1115106 3 -13.737305 479.3448 3 4 161 170 0.1146435 0.1209025 0.1184683 3 8.992414 367.1827 4 3 171 180 0.1215978 0.1278572 0.1268141 3 -4.575883 470.7891 6 4 451 460 0.3164825 0.3227500 0.3203140 2 8.972781 366.5708 7 2 461 470 0.3234456 0.3297051 0.3272707 2 -13.762273 486.1735 9 2 734 743 0.5253130 0.5315718 0.5291379 3 -13.794492 488.8915 10 4 744 753 0.5322674 0.5385267 0.5360927 3 8.934484 367.1656 11 5 754 763 0.5392222 0.5454815 0.5444381 NA -3.889094 449.9994 12 3 764 773 0.5461771 0.5524363 0.5513930 3 -4.633266 465.9208 14 4 1029 1038 0.7339873 0.7402465 0.7378123 2 8.887078 366.4878 15 2 1039 1048 0.7409420 0.7472010 0.7447668 2 -13.854000 487.4397 17 2 1329 1338 0.9426738 0.9489332 0.9464992 3 -13.892055 479.6154 18 4 1339 1348 0.9496285 0.9558887 0.9534543 3 8.848109 374.5302 19 3 1349 1358 0.9565837 0.9628436 0.9618001 3 -4.734625 475.1827 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.186372 1.328767 -0.0006097570 1.74231041 0.0029560466 5.3175742 3 1.186333 1.328717 0.0018892451 1.43467052 0.0072848560 3.7055876 4 1.186325 1.328722 0.0003484492 0.06700048 0.0016106639 0.7385440 6 1.185151 1.327562 -0.0027298573 1.54555135 0.0078895133 5.5506757 7 1.185324 1.327772 0.0024585298 0.93852968 0.0070729567 4.6460320 9 1.184133 1.326424 -0.0016190821 3.09554076 0.0051022401 8.3369090 10 1.183979 1.326288 0.0004057289 3.00872223 0.0053081127 9.0444952 11 1.184045 1.326351 0.0001871802 3.50327054 0.0001325825 4.7056875 12 1.184058 1.326374 -0.0024742437 5.94291476 0.0064065004 8.4010503 14 1.181279 1.323362 0.0029496395 4.92026040 0.0074241514 20.4599696 15 1.181234 1.323312 -0.0017457774 2.73557307 0.0066999634 7.4415306 17 1.179400 1.321370 -0.0012296774 1.12645659 0.0047534571 5.6232053 18 1.179281 1.321233 0.0023253207 2.14165747 0.0076718227 6.4380058 19 1.179371 1.321372 0.0013044477 0.04612844 0.0033211645 0.3561214 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.732 co2l1 = 0.946 co2l0 = -0.028" [1] "co2l0 = -197.22 co2l1 = 0.22" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "11 out of 25 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "14 out of 1225 1-min values rejected as stack air" [1] "14 out of 1225 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"