[1] "2025-04-30 00:27:55 MDT" [1] "1509" "151023" "d296" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151023a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 63360 63 [1] 63360 [1] 63360 [1] "testing skipping spike filter" [1] 63360 [1] 63360 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:27:59 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.752" [1] "Removing 1 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "70 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.843, ave o2scale2 = 0.752" [1] "Removing 1 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 1 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "70 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:27:59 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:27:59 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:28:05 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:28:06 MDT" [1] "reading in recalculated plot titles" [1] "Removed 70 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 985 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:28:08 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.95 co2off = 401.83 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.13 minutes" [1] "Shortest Cal: 1 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Removed 2 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 5 [3,] 6 7 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 3 4 260 269 0.4814815 0.4877445 0.4853091 2 8.252508 338.3690 4 2 270 279 0.4884399 0.4947029 0.4922685 2 -14.453125 443.8124 6 2 555 564 0.6902535 0.6965166 0.6940802 3 -13.921359 469.9253 7 4 565 574 0.6972120 0.7034750 0.7010398 3 8.803172 357.6093 8 3 575 584 0.7041703 0.7104300 0.7093869 3 -4.755562 462.0213 10 4 855 861 0.8989337 0.9051926 0.9029672 2 8.969867 368.2784 11 2 862 871 0.9058888 0.9121481 0.9097142 2 -13.746227 480.6859 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 3 1.187792 1.331022 0.0126705824 10.031828 0.031494055 25.788664 4 1.187724 1.330983 0.0132154107 10.566416 0.033468719 27.827675 6 1.186474 1.329331 0.0014146286 4.638694 0.003817802 14.345104 7 1.186150 1.328994 0.0070813306 3.149978 0.018941485 8.359244 8 1.186244 1.329116 0.0035242487 -1.209739 0.009520127 2.607642 10 1.185668 1.328424 0.0005090514 3.801853 0.003493409 13.281695 11 1.185864 1.328527 -0.0002756600 2.970662 0.001985139 7.806055 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 397.963 co2l1 = 0.947 co2l0 = -0.03" [1] "co2l0 = -197.96 co2l1 = 0.23" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "175 out of 215 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "40 out of 852 1-min values rejected as stack air" [1] "40 out of 852 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"