[1] "2017-04-07 14:09:35 MDT"
[1] "1509"
[1] "reading in daily output files:"
 [1] "/net/www/docs/homes/stephens/GO2/1509/151023.html"  
 [2] "/net/www/docs/homes/stephens/GO2/1509/151024.html"  
 [3] "/net/www/docs/homes/stephens/GO2/1509/151025.html"  
 [4] "/net/www/docs/homes/stephens/GO2/1509/151026.html"  
 [5] "/net/www/docs/homes/stephens/GO2/1509/151027.html"  
 [6] "/net/www/docs/homes/stephens/GO2/1509/151028.html"  
 [7] "/net/www/docs/homes/stephens/GO2/1509/151029.html"  
 [8] "/net/www/docs/homes/stephens/GO2/1509/151030.html"  
 [9] "/net/www/docs/homes/stephens/GO2/1509/151031.html"  
[10] "/net/www/docs/homes/stephens/GO2/1509/151101.html"  
[11] "/net/www/docs/homes/stephens/GO2/1509/151102.html"  
[12] "/net/www/docs/homes/stephens/GO2/1509/151103.html"  
[13] "/net/www/docs/homes/stephens/GO2/1509/151104.html"  
[14] "/net/www/docs/homes/stephens/GO2/1509/151105.html"  
[15] "/net/www/docs/homes/stephens/GO2/1509/151106.html"  
[16] "/net/www/docs/homes/stephens/GO2/1509/151107.html"  
[17] "/net/www/docs/homes/stephens/GO2/1509/151108.html"  
[18] "/net/www/docs/homes/stephens/GO2/1509/151109.html"  
[19] "/net/www/docs/homes/stephens/GO2/1509/151110.html"  
[20] "/net/www/docs/homes/stephens/GO2/1509/151111.html"  
[21] "/net/www/docs/homes/stephens/GO2/1509/151112.html"  
[22] "/net/www/docs/homes/stephens/GO2/1509/lmg_1509.html"
 [1] "/net/www/docs/homes/stephens/GO2/1509/151023.html"
 [2] "/net/www/docs/homes/stephens/GO2/1509/151024.html"
 [3] "/net/www/docs/homes/stephens/GO2/1509/151025.html"
 [4] "/net/www/docs/homes/stephens/GO2/1509/151026.html"
 [5] "/net/www/docs/homes/stephens/GO2/1509/151027.html"
 [6] "/net/www/docs/homes/stephens/GO2/1509/151028.html"
 [7] "/net/www/docs/homes/stephens/GO2/1509/151029.html"
 [8] "/net/www/docs/homes/stephens/GO2/1509/151030.html"
 [9] "/net/www/docs/homes/stephens/GO2/1509/151031.html"
[10] "/net/www/docs/homes/stephens/GO2/1509/151101.html"
[11] "/net/www/docs/homes/stephens/GO2/1509/151102.html"
[12] "/net/www/docs/homes/stephens/GO2/1509/151103.html"
[13] "/net/www/docs/homes/stephens/GO2/1509/151104.html"
[14] "/net/www/docs/homes/stephens/GO2/1509/151105.html"
[15] "/net/www/docs/homes/stephens/GO2/1509/151106.html"
[16] "/net/www/docs/homes/stephens/GO2/1509/151107.html"
[17] "/net/www/docs/homes/stephens/GO2/1509/151108.html"
[18] "/net/www/docs/homes/stephens/GO2/1509/151109.html"
[19] "/net/www/docs/homes/stephens/GO2/1509/151110.html"
[20] "/net/www/docs/homes/stephens/GO2/1509/151111.html"
[21] "/net/www/docs/homes/stephens/GO2/1509/151112.html"
[1] "151023" "151112"
 [1] "151023" "151024" "151025" "151026" "151027" "151028" "151029" "151030"
 [9] "151031" "151101" "151102" "151103" "151104" "151105" "151106" "151107"
[17] "151108" "151109" "151110" "151111" "151112"
[1] "000000" "999999"
[1] "151023_mr_proc.txt, 151023_cal_periods.txt, 151023_cal_param.txt,985jogs"
[1] "151024_mr_proc.txt, 151024_cal_periods.txt, 151024_cal_param.txt,1407jogs"
[1] "151025_mr_proc.txt, 151025_cal_periods.txt, 151025_cal_param.txt,1420jogs"
[1] "151026_mr_proc.txt, 151026_cal_periods.txt, 151026_cal_param.txt,1390jogs"
[1] "151027_mr_proc.txt, 151027_cal_periods.txt, 151027_cal_param.txt,1410jogs"
[1] "151028_mr_proc.txt, 151028_cal_periods.txt, 151028_cal_param.txt,1405jogs"
[1] "151029_mr_proc.txt, 151029_cal_periods.txt, 151029_cal_param.txt,1347jogs"
[1] "151030_mr_proc.txt, 151030_cal_periods.txt, 151030_cal_param.txt,336jogs"
[1] "151031_mr_proc.txt, 151031_cal_periods.txt, 151031_cal_param.txt,121jogs"
[1] "151101_mr_proc.txt, 151101_cal_periods.txt, 151101_cal_param.txt,1272jogs"
[1] "151102_mr_proc.txt, 151102_cal_periods.txt, 151102_cal_param.txt,1319jogs"
[1] "151103_mr_proc.txt, 151103_cal_periods.txt, 151103_cal_param.txt,1412jogs"
[1] "151104_mr_proc.txt, 151104_cal_periods.txt, 151104_cal_param.txt,1422jogs"
[1] "151105_mr_proc.txt, 151105_cal_periods.txt, 151105_cal_param.txt,1364jogs"
[1] "151106_mr_proc.txt, 151106_cal_periods.txt, 151106_cal_param.txt,1431jogs"
[1] "151107_mr_proc.txt, 151107_cal_periods.txt, 151107_cal_param.txt,72jogs"
[1] "151108_mr_proc.txt, 151108_cal_periods.txt, 151108_cal_param.txt,106jogs"
[1] "151109_mr_proc.txt, 151109_cal_periods.txt, 151109_cal_param.txt,116jogs"
[1] "151110_mr_proc.txt, 151110_cal_periods.txt, 151110_cal_param.txt,722jogs"
[1] "151111_mr_proc.txt, 151111_cal_periods.txt, 151111_cal_param.txt,1284jogs"
[1] "151112_mr_proc.txt, 151112_cal_periods.txt, 151112_cal_param.txt,1204jogs"
[1] "151023" "151112" "d296"   "d316"  
[1] "Calculating derived concentration values"
[1] "2017-04-07 14:10:23 MDT"
[1] "o2scaleopt = wt, ave o2scale1 = 0.871, ave o2scale2 = 0.776"
[1] "redoing deltadiff calc"
[1] "reading in medium-rate plot titles"
[1] "Plotting 1-minute data"
[1] "2017-04-07 14:10:44 MDT"
[1] "Plotting O2 and CO2 concentration data"
[1] "2017-04-07 14:11:14 MDT"
[1] "2017-04-07 14:11:21 MDT"
[1] "Reading in cylinder log"
Read 68 records
[1] "Finding cylinder IDs"
Read 420 records
[1] "position 1 cylinder CB08910 description: HS CO2 = 384.48 O2 = -529.1"
[1] "position 2 cylinder CA07671 description: MS CO2 = 393.12 O2 = -532.4"
[1] "position 3 cylinder CB08911 description: LS CO2 = 405.98 O2 = -657.2"
[1] "position 4 cylinder CC332564 description: LT CO2 = 393.92 O2 = -579.3"
[1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA"
[1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA"
[1] "Plotting jog shapes"
[1] "1509 Valve transient for  Line 1 after Line 2 = 0.07 , 0.11 , 0.21 , 0.27 , 0.16 n = 3"
[1] "1509 Valve transient for  Line 1 after Cal = -0.79 , -0.38 , -0.03 , -0.01 , 0 n = 67"
[1] "1509 Valve transient for  Line 2 after Line 1 = 20.39 , 12.28 , 1.82 , -0.81 , -0.92 n = 4"
[1] "1509 Valve transient for  Line 2 after Cal = -0.3 , -0.15 , 0.01 , 0.01 , 0.01 n = 1"
[1] "1509 Valve transient for  Line 1 after HS = -0.85 , -0.39 , 0.01 , 0.01 , 0.08 n = 23"
[1] "1509 Valve transient for  Line 1 after MS = -0.36 , -0.17 , -0.03 , -0.04 , -0.03 n = 31"
[1] "1509 Valve transient for  Line 1 after LT = -4.14 , -2.97 , -0.95 , 0.01 , 0.06 n = 13"
[1] "1509 Valve transient for  Line 2 after MS = -0.3 , -0.15 , 0.01 , 0.01 , 0.01 n = 1"
[1] "1509 Valve transient for  Line 2 after LT = -3.93 , -2.69 , -0.67 , 0.15 , 0.2 n = 1"
[1] "1509 Valve transient for  HS after Line 1 = 0.83 , 0.42 , 0.01 , 0 , 0 n = 27"
[1] "1509 Valve transient for  HS after Line 2 = 0.76 , 0.38 , 0 , 0 , 0 n = 1"
[1] "1509 Valve transient for  HS after MS = 1.44 , 0.72 , 0.01 , 0 , 0 n = 1"
[1] "1509 Valve transient for  HS after LS = 3.42 , 1.72 , 0.01 , 0.01 , 0 n = 31"
[1] "1509 Valve transient for  MS after Line 1 = -0.59 , -0.3 , 0 , 0 , 0 n = 1"
[1] "1509 Valve transient for  MS after LS = 2.05 , 1.02 , 0 , 0 , 0 n = 19"
[1] "1509 Valve transient for  MS after LT = 1.28 , 0.64 , 0 , 0 , 0 n = 11"
[1] "1509 Valve transient for  LS after Line 1 = -1.71 , -0.86 , 0 , 0 , 0 n = 33"
[1] "1509 Valve transient for  LS after Line 2 = -1.31 , -0.66 , -0.01 , 0 , 0 n = 2"
[1] "1509 Valve transient for  LS after HS = -3.5 , -1.76 , -0.02 , -0.01 , 0 n = 38"
[1] "1509 Valve transient for  LT after HS = -0.43 , -0.19 , 0.05 , 0.04 , 0.03 n = 11"
[1] "1509 Valve transient for  LT after LS = 0.77 , 0.41 , 0.05 , 0.04 , 0.02 n = 11"
[1] "Plotting calibration sds and slopes"
[1] "Plotting calibration parameters"
[1] "Plotting calibration data"
[1] "337 out of 4155 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm"
[1] "3818 out of 18361 1-min values rejected as stack air"
[1] "3678 out of 17616 Line 1 1-min values rejected as stack air"
[1] "140 out of 745 Line 2 1-min values rejected as stack air"
[1] "JGOFS data found"
[1] "LOXY data found"
[1] "LMG1509loxy.d296"
[1] "LMG1509loxy.d297"
[1] "LMG1509loxy.d298"
[1] "LMG1509loxy.d299"
[1] "LMG1509loxy.d300"
[1] "LMG1509loxy.d301"
[1] "LMG1509loxy.d302"
[1] "LMG1509loxy.d304"
[1] "LMG1509loxy.d305"
[1] "LMG1509loxy.d306"
[1] "LMG1509loxy.d307"
[1] "LMG1509loxy.d308"
[1] "LMG1509loxy.d309"
[1] "LMG1509loxy.d312"
[1] "LMG1509loxy.d313"
[1] "LMG1509loxy.d314"
[1] "LMG1509loxy.d315"
[1] "LMG1509loxy.d316"
[1] "calculating wind bins"
[1] "aggregating 10 min SDs"
[1] "aggregating O2s"
[1] "calculating anomalous O2s"
[1] "aggregating anomalous O2s"
[1] "aggregating anomalous O2s diurnally"
       [,1]      [,2]
 [1,]  92.5 0.3333333
 [2,] 102.5 0.3333333
 [3,] 107.5 0.3333333
 [4,] 112.5 0.3333333
 [5,] 117.5 0.3333333
 [6,] 122.5 0.3333333
 [7,] 162.5 3.3333333
 [8,] 167.5 0.3333333
 [9,] 187.5 0.3333333
[10,] 247.5 0.3333333
[11,] 252.5 0.6666667
[12,] 257.5 0.6666667
[13,] 262.5 0.3333333
[14,] 267.5 1.0000000
[15,] 272.5 1.6666667
[16,] 277.5 1.3333333
[17,] 282.5 1.3333333
[18,] 287.5 1.6666667
[19,] 292.5 2.0000000
[20,] 297.5 3.3333333
[21,] 302.5 2.3333333
[22,] 307.5 1.3333333
[23,] 312.5 2.0000000
[24,] 322.5 0.3333333
[25,] 327.5 1.0000000
[26,] 342.5 0.3333333
[27,] 407.5 0.3333333
[28,] 412.5 0.3333333
[29,] 422.5 0.3333333
[30,] 432.5 1.0000000
[31,] 437.5 0.6666667
[32,] 442.5 1.0000000
[33,] 447.5 1.0000000
       [,1]      [,2]
 [1,]  92.5 0.6666667
 [2,]  97.5 0.6666667
 [3,] 102.5 0.6666667
 [4,] 107.5 0.3333333
 [5,] 112.5 1.0000000
 [6,] 117.5 0.3333333
 [7,] 137.5 0.3333333
 [8,] 147.5 0.3333333
 [9,] 157.5 0.3333333
[10,] 162.5 1.3333333
[11,] 172.5 0.3333333
[12,] 177.5 0.3333333
[13,] 182.5 0.6666667
[14,] 192.5 0.3333333
[15,] 197.5 0.3333333
[16,] 202.5 2.6666667
[17,] 207.5 2.3333333
[18,] 212.5 2.6666667
[19,] 217.5 1.6666667
[20,] 222.5 2.0000000
[21,] 232.5 0.3333333
[22,] 247.5 0.3333333
[23,] 252.5 1.0000000
[24,] 257.5 0.3333333
[25,] 262.5 2.0000000
[26,] 267.5 2.6666667
[27,] 272.5 6.3333333
[28,] 277.5 1.6666667
[29,] 282.5 1.0000000
[30,] 287.5 0.3333333
[31,] 292.5 1.6666667
[32,] 297.5 1.6666667
[33,] 302.5 2.0000000
[34,] 307.5 2.6666667
[35,] 312.5 3.3333333
[36,] 317.5 3.0000000
[37,] 322.5 2.0000000
[38,] 327.5 0.6666667
[39,] 332.5 0.3333333
[40,] 412.5 0.6666667
       [,1]      [,2]
 [1,]  92.5 0.3333333
 [2,]  97.5 0.3333333
 [3,] 102.5 0.3333333
 [4,] 222.5 0.3333333
 [5,] 227.5 0.3333333
 [6,] 277.5 1.6666667
 [7,] 282.5 2.3333333
 [8,] 312.5 0.3333333
 [9,] 317.5 0.3333333
[10,] 322.5 0.3333333
[11,] 327.5 0.6666667
[12,] 332.5 0.6666667
[13,] 337.5 0.6666667
[14,] 342.5 0.3333333
[15,] 347.5 0.6666667
[16,] 372.5 0.3333333
[17,] 377.5 0.3333333
[18,] 382.5 0.3333333
[19,] 387.5 0.3333333
[20,] 392.5 0.3333333
[21,] 402.5 0.3333333
[22,] 407.5 0.3333333
[23,] 412.5 0.3333333
[24,] 417.5 0.3333333
[25,] 422.5 0.3333333
[26,] 427.5 0.3333333
[27,] 432.5 0.3333333
[28,] 437.5 0.3333333
[29,] 447.5 0.3333333
     [,1] [,2]
[1] "making cruise html"
[1] "2017-04-07 14:12:03 MDT"
[1] "plotting cyl pressures"
[1] "LMG"
[1] "making time-series html"
[1] "making latitude gradient html"
[1] "making html"