[1] "2025-04-30 00:27:21 MDT" [1] "1508" "151017" "d290" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151017a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 34352 63 [1] 34352 [1] 34352 [1] "testing skipping spike filter" [1] 34352 [1] 34352 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:27:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "20 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.848, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "20 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:27:22 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:27:22 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:27:28 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:27:29 MDT" [1] "reading in recalculated plot titles" [1] "Removed 21 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 551 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:27:31 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 384.35 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 9.01 minutes" [1] "Shortest Cal: 9.01 minutes" [1] "Longest Cal: 9.01 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 2 [2,] 3 6 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 4 113 122 0.08018359 0.08644285 0.08400862 2 19.491406 364.7727 3 2 123 131 0.08713822 0.09339760 0.09101290 2 -3.436902 469.1978 5 2 398 407 0.28888084 0.29514002 0.29270579 3 -3.478188 478.4453 6 4 408 417 0.29583550 0.30209491 0.29966068 3 19.441039 362.7301 7 5 418 427 0.30279051 0.30904980 0.30800665 NA 6.372594 434.2914 8 3 428 436 0.30974537 0.31600469 0.31530910 3 5.754973 488.3680 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.179627 1.318170 0.0010668476 3.5755451 0.005019160 11.422778 3 1.179754 1.318339 -0.0005853821 0.7244621 0.002774420 18.709518 5 1.178490 1.317321 -0.0007666526 0.7210300 0.003236407 6.857354 6 1.178197 1.317025 0.0033214913 0.1538512 0.008831631 4.235243 7 1.178201 1.317030 -0.0074266694 -2.0138962 0.005259107 3.292789 8 1.177949 1.316515 0.0004453165 2.9298358 0.003343722 3.029194 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.913 co2l1 = 0.938 co2l0 = -0.006" [1] "co2l0 = -196.5 co2l1 = 0.221" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "33 out of 50 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "17 out of 476 1-min values rejected as stack air" [1] "17 out of 476 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"