[1] "2025-04-30 00:26:49 MDT" [1] "1508" "151016" "d289" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151016a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 86160 63 [1] 86160 [1] 86160 [1] "testing skipping spike filter" [1] 86160 [1] 86160 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:26:53 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.764" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "160 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.853, ave o2scale2 = 0.764" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "162 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:26:53 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:26:53 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:27:10 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:27:12 MDT" [1] "reading in recalculated plot titles" [1] "Removed 162 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1273 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:27:16 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 384.24 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.02 minutes" [1] "Shortest Cal: 4.01 minutes" [1] "Longest Cal: 9.03 minutes" [1] "Removed 3 calibration row(s) with high SD" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 7 [4,] 8 9 [5,] 10 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 2 2 52 60 0.03654676 0.04281013 0.04072354 3 -3.297067 485.2457 3 4 61 70 0.04350553 0.04976797 0.04733437 3 19.629813 366.5961 5 3 80 89 0.05741898 0.06367813 0.06263482 3 5.929023 477.0919 7 4 341 350 0.24523880 0.25150425 0.24906999 2 19.588789 368.3896 8 2 351 360 0.25219951 0.25845952 0.25602495 2 -3.347633 483.4342 10 2 588 594 0.45550602 0.45967946 0.45828862 2 -3.416813 485.3018 11 4 595 600 0.46107060 0.46733796 0.46559541 2 19.517313 367.4126 14 4 845 854 0.66253947 0.66880764 0.66637080 2 19.482344 364.9046 15 2 855 861 0.67158921 0.67576620 0.67437507 2 -3.450725 480.7760 18 2 1092 1101 0.87141363 0.87767344 0.87523887 3 -3.450688 487.0015 19 4 1102 1111 0.87836913 0.88463229 0.88219524 3 19.482148 382.3261 20 3 1112 1121 0.88532766 0.89159841 0.89055099 3 5.780984 473.6492 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 2 1.177046 1.314370 -0.0002195083 -0.4597424 0.001580153 5.867829 3 1.176879 1.314078 0.0022189459 -0.9575583 0.007696315 3.792003 5 1.176670 1.313860 -0.0013678030 2.2725394 0.003593915 4.444073 7 1.172071 1.308712 -0.0024091440 -0.3718305 0.007468829 1.408874 8 1.171805 1.308448 -0.0014566620 0.3933195 0.005344122 4.715023 10 1.166238 1.302093 -0.0022282622 2.8374297 0.004575751 6.216866 11 1.166933 1.302983 0.0037206538 3.7409380 0.011873684 11.918475 14 1.171923 1.308547 -0.0010622402 1.4063444 0.003768851 7.299136 15 1.172410 1.308961 -0.0012167015 4.2001083 0.003732407 7.877242 18 1.177275 1.315092 -0.0005393342 0.3150077 0.002366762 2.190007 19 1.177425 1.315241 0.0019877064 0.9419033 0.006287471 22.782652 20 1.177564 1.315443 -0.0001653491 2.0748057 0.003935976 2.698217 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.853 co2l1 = 0.938 co2l0 = -0.005" [1] "co2l0 = -198.76 co2l1 = 0.223" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "66 out of 75 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "9 out of 1087 1-min values rejected as stack air" [1] "9 out of 1087 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"