[1] "2025-04-30 00:26:18 MDT" [1] "1508" "151015" "d288" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151015a.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 85980 63 [1] 85980 [1] 85980 [1] "testing skipping spike filter" [1] 85980 [1] 85980 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:26:22 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.759" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "19 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.847, ave o2scale2 = 0.759" [1] "Removing 0 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with SP SD > 1000" [1] "19 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:26:23 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:26:23 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:26:39 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:26:41 MDT" [1] "reading in recalculated plot titles" [1] "Removed 19 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1412 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:26:44 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.18 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.939 co2off = 398.36 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.03 minutes" [1] "Average Cal: 8.95 minutes" [1] "Shortest Cal: 8.01 minutes" [1] "Longest Cal: 9.05 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 1 [2,] 2 4 [3,] 5 6 [4,] 8 10 [5,] 11 12 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig 1 2 1 9 0.001680556 0.007244416 0.005157986 1 -3.181509 492.3242 3 2 289 298 0.202824074 0.209091059 0.206653686 3 -3.167672 483.4066 4 4 299 308 0.209788194 0.216055816 0.213618439 3 19.745453 366.3278 5 3 309 318 0.216752488 0.223022541 0.221978082 3 6.069102 481.6832 7 4 573 582 0.411209462 0.417496528 0.415046557 2 19.721500 363.3731 8 2 583 592 0.418193576 0.424467535 0.422028602 2 -3.189844 483.6137 9 5 593 602 0.425164207 0.431435012 0.430389808 NA 6.710125 451.2174 11 2 869 878 0.619666696 0.625939062 0.623499255 3 -3.260633 481.0896 12 4 879 888 0.626637008 0.632909057 0.630469752 3 19.655594 363.1782 13 3 889 898 0.633606510 0.639877720 0.638832473 3 5.966766 476.5154 15 4 1167 1176 0.828153183 0.834424797 0.831986183 2 19.666008 362.9201 16 2 1177 1186 0.835122483 0.841393519 0.838954666 2 -3.277859 479.3579 jfcv1 jfcv2 co2slp o2slp co2sd o2sd 1 1.179270 1.316322 0.0019324266 -4.3629829 0.004581926 16.665066 3 1.182510 1.320189 -0.0005001139 -3.5169079 0.002117305 11.456009 4 1.182479 1.320203 0.0015595153 2.3619348 0.006013912 9.106776 5 1.182744 1.320475 0.0008913348 -2.7306891 0.002401389 11.427577 7 1.182702 1.320485 -0.0006193789 -0.2455712 0.003946631 5.398223 8 1.182674 1.320471 0.0015820151 0.3801353 0.004553011 14.208312 9 1.182610 1.320390 -0.0017433896 -0.8950144 0.001237437 2.325546 11 1.180281 1.318003 -0.0006204127 1.1849270 0.002777749 8.008467 12 1.180182 1.317936 0.0008629859 2.2730568 0.008042785 5.885888 13 1.180175 1.317939 0.0019457307 1.8232543 0.005609378 3.607545 15 1.179280 1.316958 -0.0004916686 5.2986460 0.002698676 15.143319 16 1.179359 1.317018 -0.0029573729 -0.6276464 0.009857565 5.028545 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.688 co2l1 = 0.939 co2l0 = -0.005" [1] "co2l0 = -193.41 co2l1 = 0.211" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "20 out of 20 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "0 out of 1243 1-min values rejected as stack air" [1] "0 out of 1243 Line 1 1-min values rejected as stack air" [1] "0 out of 0 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"