[1] "2025-04-30 00:25:20 MDT" [1] "1508" "151014" "d287" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151014a.hr" [1] "reading in high rate data from /scr/sci/stephens/GO2DAT/DIRECT/151014b.hr" [1] "reading in hr file header" Read 27 items [1] "Parsing HR flags" [1] "Doing high rate calculations (mean, sd, slope, shape)" [1] 98724 63 [1] 98724 [1] 98724 [1] "testing skipping spike filter" [1] 98724 [1] 98724 [1] "recalculating jog averages" [1] "recalculating jog sds" [1] "recalculating jog slopes" [1] "Parsing MR flags" [1] "Calculating derived concentration values" [1] "2025-04-30 00:25:24 MDT" [1] "o2scaleopt = wt, ave o2scale1 = 0.874, ave o2scale2 = 0.765" [1] "Removing 0 MR FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 MR FC 1 jog(s) with SP SD > 1000" [1] "Removing 0 MR FC 2 jog(s) with SP SD > 1000" [1] "133 MR delta diff NA values ( most likely because WTDIFF > 200 )" [1] "recalc: o2scaleopt = wt, ave o2scale1 = 0.857, ave o2scale2 = 0.764" [1] "Removing 84 RC FC 1 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 2 jog(s) with WT SD > 1000" [1] "Removing 0 RC FC 1 jog(s) with SP SD > 1000" [1] "Removing 84 RC FC 2 jog(s) with SP SD > 1000" [1] "157 RC delta diff NA values ( most likely because WTDIFF > 200 )" [1] "2025-04-30 00:25:25 MDT" [1] "Plotting 1-second data" [1] "2025-04-30 00:25:25 MDT" [1] "reading in high-rate plot titles" [1] "Plotting 1-minute data" [1] "2025-04-30 00:26:04 MDT" [1] "reading in medium-rate plot titles" [1] "Plotting recalculated 1-minute data" [1] "2025-04-30 00:26:05 MDT" [1] "reading in recalculated plot titles" [1] "Removed 157 row(s) with NAs in them ( most likely because WTDIFF > 200 )" [1] "TEMP: 1149 0 TRUE" [1] "Plotting O2 and CO2 concentration data" [1] "2025-04-30 00:26:14 MDT" [1] "Reading in cylinder log" Read 78 records [1] "Finding cylinder IDs" Read 536 records [1] "position 1 cylinder CB08910 description: HS CO2 = 384.68 O2 = -522.3" [1] "position 2 cylinder CA07671 description: MS CO2 = 393.3 O2 = -526.1" [1] "position 3 cylinder CB08911 description: LS CO2 = 406.19 O2 = -648.5" [1] "position 4 cylinder CC332564 description: LT CO2 = 394.11 O2 = -572.1" [1] "position 5 cylinder CA07554 description: WT1 CO2 = NA O2 = NA" [1] "position 6 cylinder CA07556 description: WT2 CO2 = NA O2 = NA" [1] "Nominal linear calibrations:" [1] "co2scl = 0.94 co2off = 376.91 o2scla = 1 o2offa = 0" [1] "Finding cal and sample periods" [1] "Plotting MR jog shapes" [1] "Median Cal: 9.01 minutes" [1] "Average Cal: 8.91 minutes" [1] "Shortest Cal: 8.02 minutes" [1] "Longest Cal: 9.02 minutes" [1] "Plotting calibration sds and slopes" [1] "cbind(calstart,calend)" calstart calend [1,] 1 3 [2,] 4 5 [3,] 6 9 [4,] 10 10 [1] "calperiods" type posi pose timei timee timea grp co2sig o2sig jfcv1 2 2 247 256 0.3679202 0.3741794 0.3717452 3 -3.178344 482.5889 1.170603 3 4 257 266 0.3748748 0.3811342 0.3786999 3 19.766922 369.7769 1.170538 4 3 267 276 0.3818296 0.3880890 0.3870457 3 6.062359 472.3205 1.170636 8 4 545 554 0.5766328 0.5828935 0.5804584 2 19.762883 373.6965 1.171501 9 2 555 564 0.5835891 0.5898486 0.5874141 2 -3.168547 475.7400 1.171614 12 2 844 853 0.7853307 0.7915925 0.7891569 3 -3.178430 481.4676 1.175102 13 4 854 863 0.7922890 0.7985495 0.7961145 3 19.745156 373.5638 1.174957 14 5 864 873 0.7992453 0.8055043 0.8044611 NA 6.685687 437.9807 1.175030 15 3 874 883 0.8061996 0.8124593 0.8114160 3 6.048195 473.6893 1.175236 17 4 1141 1149 0.9940266 0.9995937 0.9975063 1 19.747750 365.9566 1.179048 jfcv2 co2slp o2slp co2sd o2sd 2 1.306478 0.0007638398 0.5019795 0.003785546 5.597607 3 1.306532 0.0034932981 4.3860052 0.009875099 14.477419 4 1.306712 -0.0004204489 -12.1441189 0.001498418 15.732067 8 1.308858 -0.0005324075 1.2911983 0.002505894 6.743563 9 1.308948 -0.0001678438 -0.8008172 0.002127821 5.510254 12 1.311863 -0.0033529123 2.8708804 0.008434519 10.102253 13 1.311830 -0.0001962093 3.5438421 0.004471886 10.124878 14 1.311933 -0.0018723475 5.1729375 0.001325825 6.718295 15 1.312063 0.0010051285 8.8422143 0.002728495 11.874087 17 1.315919 0.0018551372 1.6891431 0.004137764 4.219555 [1] "Plotting calibration fits" [1] "Average calibration parameters:" [1] "co2l0 = 387.647 co2l1 = 0.938 co2l0 = -0.004" [1] "co2l0 = -203.76 co2l1 = 0.235" [1] "Plotting calibration parameters" [1] "Plotting calibration data" [1] "84 out of 255 remaining 1-min values OK w abs(diffback+difffwd)/2 < 0.2 and difference from interpolated clean < 0.2 ppm" [1] "171 out of 1017 1-min values rejected as stack air" [1] "159 out of 866 Line 1 1-min values rejected as stack air" [1] "12 out of 151 Line 2 1-min values rejected as stack air" [1] "JGOFS data found" [1] "LOXY data found" [1] "making html"